breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
RA 1,179,510 C→T S554S (AGC→AGT)  purL → Phosphoribosylformylglycinamidine synthase
RA 1,806,928 G→T G76V (GGG→GTG)  yeiG → S‑formylglutathione hydrolase YeiG
RA 3,065,799 T→G F150V (TTT→GTT)  rcsC_6 → Sensor histidine kinase RcsC
JC 4,257,352 +GCGGCCGC intergenic (‑281/+7) CJ019_03991 ← / ← CJ019_03994 putative ABC transporter ATP‑binding protein/hypothetical protein
MC JC 4,963,095 Δ12,336 bp [CJ019_04659]–[flgE] [CJ019_04659], fabH, CJ019_04661, CJ019_04662, CJ019_04663, flgI, flgH, flgG, flgF, CJ019_04668, [flgE]
RA 5,756,060 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ ACB122 80687 80877 191 19 [17] [17] 19 [gcvA_2] [gcvA_2]
* * ÷ ACB122 87979 88060 82 18 [17] [17] 25 [CJ019_00094]–[CJ019_00095] [CJ019_00094],[CJ019_00095]
* * ÷ ACB122 161232 161395–161314 83–164 18 [12] [14] 18 [uctC_1] [uctC_1]
* * ÷ ACB122 213560 213677 118 19 [16] [12] 18 [CJ019_00185] [CJ019_00185]
* * ÷ ACB122 277590 277685 96 18 [17] [16] 19 [betT2]–[tauD_2] [betT2],[tauD_2]
* * ÷ ACB122 329235 329378 144 18 [16] [16] 20 [CJ019_00302] [CJ019_00302]
* * ÷ ACB122 517190 517328 139 19 [17] [17] 18 tyrS/birA Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
* * ÷ ACB122 674271 674386 116 18 [16] [17] 18 [nimR_1]–[mcpH_2] [nimR_1],[mcpH_2]
* * ÷ ACB122 711469 711559 91 18 [15] [16] 18 [thiO]–[aam] [thiO],[aam]
* * ÷ ACB122 1000532 1000632 101 18 [17] [16] 18 [fecA_1] [fecA_1]
* * ÷ ACB122 1119623 1119715 93 18 [17] [11] 18 tdcG_2/gcvP_1 L‑serine dehydratase TdcG/Glycine dehydrogenase (decarboxylating)
* * ÷ ACB122 1304746 1304878 133 18 [16] [16] 18 [rapA] [rapA]
* * ÷ ACB122 1360606 1361013 408 18 [16] [16] 18 [CJ019_01275] [CJ019_01275]
* * ÷ ACB122 1396583 1396683 101 18 [17] [16] 18 [CJ019_01313]–[mcpU_1] [CJ019_01313],[mcpU_1]
* * ÷ ACB122 1457212 1457294 83 20 [17] [15] 18 [algL]–[algX] [algL],[algX]
* * ÷ ACB122 1537410 1537560 151 19 [17] [17] 20 [mdfA] [mdfA]
* * ÷ ACB122 1585604 1585702 99 18 [16] [17] 18 CJ019_01493 hypothetical protein
* * ÷ ACB122 1705087 1705206 120 19 [17] [17] 18 ppc/adk Phosphoenolpyruvate carboxylase/Adenylate kinase
* * ÷ ACB122 1914560 1914649 90 20 [16] [17] 18 [ppsC_1]–[CJ019_01830] [ppsC_1],[CJ019_01830]
* * ÷ ACB122 1940824 1940915 92 22 [16] [15] 20 CJ019_01857/gshAB hypothetical protein/Glutathione biosynthesis bifunctional proteinGshAB
* * ÷ ACB122 2092956 2093072 117 18 [17] [15] 19 rcsC_3/CJ019_01993 Sensor histidine kinase RcsC/hypothetical protein
* * ÷ ACB122 2288826 2288939 114 18 [16] [17] 18 CJ019_02171/CJ019_02172 hypothetical protein/hypothetical protein
* * ÷ ACB122 2951808 2951922 115 18 [17] [17] 19 puuC_1/fatA_2 NADP/NAD‑dependent aldehyde dehydrogenase PuuC/Ferric‑anguibactin receptor FatA
* * ÷ ACB122 3046206 3046362 157 18 [16] [17] 18 [rcsC_5]–[degU_2] [rcsC_5],[degU_2]
* * ÷ ACB122 3145287 3145409 123 19 [17] [17] 19 livH_4 High‑affinity branched‑chain amino acidtransport system permease protein LivH
* * ÷ ACB122 3459854 3459934 81 18 [15] [17] 19 CJ019_03284 hypothetical protein
* * ÷ ACB122 3769384 3769472 89 18 [17] [15] 18 CJ019_03581/CJ019_03582 hypothetical protein/hypothetical protein
* * ÷ ACB122 3839285 3839403 119 18 [15] [17] 18 [argP_2] [argP_2]
* * ÷ ACB122 3944682 3944825 144 18 [16] [14] 26 CJ019_03729/CJ019_03730 hypothetical protein/hypothetical protein
* * ÷ ACB122 4163771 4163893 123 19 [17] [15] 18 katG/leuO_2 Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
* * ÷ ACB122 4330050 4330141 92 18 [17] [15] 18 [CJ019_04068] [CJ019_04068]
* * ÷ ACB122 4344767 4344837 71 18 [16] [17] 18 nmoA Nitronate monooxygenase
* * ÷ ACB122 4495360 4495450 91 18 [17] [17] 23 [xanP]–[dsrE] [xanP],[dsrE]
* * ÷ ACB122 4732414 4732482 69 18 [17] [17] 20 gltA/CJ019_04468 Citrate synthase/hypothetical protein
* * ÷ ACB122 4801864 4802345 482 18 [17] [17] 18 CJ019_04509/dsbD_2 hypothetical protein/Thiol:disulfide interchange protein DsbD
* * ÷ ACB122 4944878 4944981 104 19 [16] [15] 18 [CJ019_04642] [CJ019_04642]
* * ÷ ACB122 5156429 5156590 162 18 [15] [17] 19 [CJ019_04852] [CJ019_04852]
* * ÷ ACB122 5193577 5193672 96 21 [13] [14] 18 [gltR_4]–[CJ019_04888] [gltR_4],[CJ019_04888]
* * ÷ ACB122 5250783 5250877 95 18 [17] [16] 20 [CJ019_04947]–[CJ019_04948] [CJ019_04947],[CJ019_04948]
* * ÷ ACB122 5477744 5477871 128 19 [17] [17] 19 purH/purD Bifunctional purine biosynthesis protein PurH/Phosphoribosylamine‑‑glycine ligase
* * ÷ ACB122 5499104 5499298 195 18 [15] [14] 18 [CJ019_05176] [CJ019_05176]
* * ÷ ACB122 5531153 5531274 122 19 [17] [17] 18 [CJ019_05209] [CJ019_05209]
* * ÷ ACB122 5895782 5895861 80 18 [17] [16] 21 [CJ019_05521] [CJ019_05521]
* * ÷ ACB122 5912848 5912933 86 18 [13] [17] 18 CJ019_05537 hypothetical protein