breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	44,301	(T)9→8	intergenic (+132/‑359)	oprD_1 → / → czcR_2	Porin D/Transcriptional activator protein CzcR
RA	120,983	(T)9→8	intergenic (+280/+92)	polA → / ← engB	DNA polymerase I/putative GTP‑binding protein EngB
RA	179,484	T→C	C316R (TGC→CGC)	CJ019_00182 →	hypothetical protein
RA	1,155,638	G→A	R118H (CGC→CAC)	oprB_1 →	Porin B
RA	1,835,872	T→C	S660G (AGC→GGC)	barA ←	Signal transduction histidine‑protein kinaseBarA
RA	3,066,184	T→G	L278R (CTG→CGG)	rcsC_6 →	Sensor histidine kinase RcsC
JC	4,257,352	+GCGGCCGC	intergenic (‑281/+7)	CJ019_03991 ← / ← CJ019_03994	putative ABC transporter ATP‑binding protein/hypothetical protein
RA	4,647,581	T→C	intergenic (+164/‑220)	CJ019_04390 → / → ndhC	hypothetical protein/NAD(P)H‑quinone oxidoreductase subunit 3,chloroplastic
RA	4,760,718	G→T	S33I (AGC→ATC)	vanB →	vanillate O‑demethylase oxidoreductase
RA	5,756,060	(A)6→5	coding (781/834 nt)	CJ019_05400 →	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	ACB122	87965	88056	92	21 [20]	[17] 21	[CJ019_00094]–[CJ019_00095]	[CJ019_00094],[CJ019_00095]
*	*	÷	ACB122	517193	517295	103	22 [19]	[20] 25	tyrS/birA	Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
*	*	÷	ACB122	674230	674389	160	23 [19]	[20] 21	[nimR_1]–[mcpH_2]	[nimR_1],[mcpH_2]
*	*	÷	ACB122	1119624	1119715	92	21 [20]	[14] 27	tdcG_2/gcvP_1	L‑serine dehydratase TdcG/Glycine dehydrogenase (decarboxylating)
*	*	÷	ACB122	1563447	1563610	164	22 [19]	[15] 25	[pcaF_1]	[pcaF_1]
*	*	÷	ACB122	1585616	1585719	104	24 [19]	[20] 21	CJ019_01493	hypothetical protein
*	*	÷	ACB122	1923382	1923539	158	21 [20]	[18] 21	[apeB]	[apeB]
*	*	÷	ACB122	1940792	1940915	124	24 [16]	[10] 24	[CJ019_01857]	[CJ019_01857]
*	*	÷	ACB122	2234304	2234451	148	21 [19]	[20] 21	[gltX]	[gltX]
*	*	÷	ACB122	3046197	3046352	156	21 [20]	[19] 21	[rcsC_5]–[degU_2]	[rcsC_5],[degU_2]
*	*	÷	ACB122	4163782	4163880	99	22 [20]	[18] 23	katG/leuO_2	Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
*	*	÷	ACB122	4344772	4344871	100	21 [19]	[20] 22	nmoA	Nitronate monooxygenase
*	*	÷	ACB122	4666892	4666999	108	24 [20]	[19] 21	[btuB_4]	[btuB_4]
*	*	÷	ACB122	4732421	4732503	83	21 [14]	[18] 22	[CJ019_04468]	[CJ019_04468]
*	*	÷	ACB122	4883526	4883645	120	22 [20]	[18] 22	hyi/glxR	Hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	*	÷	ACB122	4944865	4945018	154	21 [20]	[20] 21	[CJ019_04642]	[CJ019_04642]
*	*	÷	ACB122	5193558	5193689	132	22 [20]	[20] 22	[gltR_4]–[CJ019_04888]	[gltR_4],[CJ019_04888]
*	*	÷	ACB122	5250785	5250877	93	23 [19]	[20] 27	[CJ019_04947]–[CJ019_04948]	[CJ019_04947],[CJ019_04948]
*	*	÷	ACB122	5499091	5499283	193	22 [20]	[20] 21	[CJ019_05176]	[CJ019_05176]
*	*	÷	ACB122	5895741	5895861	121	21 [20]	[19] 21	[CJ019_05521]	[CJ019_05521]