mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 44,301 | (T)9→8 | intergenic (+132/‑359) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 120,983 | (T)9→8 | intergenic (+280/+92) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 179,484 | T→C | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 495,400 | A→G | V213V (GTA→GTG) | CJ019_00444 → | hypothetical protein |
| RA | 690,150 | T→G | intergenic (+27/‑2432) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| MC JC | 1,524,788 | Δ107 bp | coding (38‑144/630 nt) | CJ019_01439 ← | hypothetical protein |
| RA | 3,061,793 | G→A | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,779,014 | (C)6→7 | intergenic (+6/+10) | CJ019_03590 → / ← mhpT | hypothetical protein/3‑(3‑hydroxy‑phenyl)propionate transporter |
| RA | 3,957,351 | G→A | H100Y (CAC→TAC) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 5,757,239 | (A)6→5 | coding (781/834 nt) | CJ019_05400 → | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 87965 | 88058 | 94 | 30 [27] | [27] 31 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | KT2440 | 674218 | 674386 | 169 | 28 [26] | [27] 28 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | KT2440 | 1585581 | 1585716 | 136 | 28 [27] | [27] 28 | CJ019_01493 | hypothetical protein |
| * | * | ÷ | KT2440 | 1923385 | 1923552 | 168 | 29 [27] | [27] 28 | [apeB] | [apeB] |
| * | * | ÷ | KT2440 | 2288810 | 2288934 | 125 | 32 [26] | [27] 35 | [CJ019_02171] | [CJ019_02171] |
| * | * | ÷ | KT2440 | 3046190 | 3046354 | 165 | 32 [27] | [27] 28 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | KT2440 | 4163779 | 4163893 | 115 | 28 [22] | [24] 29 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4734448 | 4734566 | 119 | 28 [27] | [25] 28 | [CJ019_04468] | [CJ019_04468] |
| * | * | ÷ | KT2440 | 4846179 | 4846358 | 180 | 31 [26] | [26] 28 | recR/ybaB | Recombination protein RecR/Nucleoid‑associated protein YbaB |
| * | * | ÷ | KT2440 | 4944725 | 4944857 | 133 | 28 [25] | [26] 28 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | KT2440 | 5500268 | 5500501 | 234 | 29 [26] | [27] 28 | [CJ019_05176] | [CJ019_05176] |
| * | * | ÷ | KT2440 | 5896952 | 5897040 | 89 | 28 [27] | [26] 28 | [CJ019_05521] | [CJ019_05521] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 4918800 = | 1 (0.010) | 110 (1.520) | 41/252 | 0.3 | 99.1% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 1 (0.010) | 55 (0.750) | 33/254 | 0.8 | 98.2% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||