mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 41 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 1,935,418 | 0 | C | A | 59.1% | ‑1.8 / 19.8 | 22 | intergenic (+39/‑166) | CJ019_01850/yjcH_1 | hypothetical protein/Inner membrane protein YjcH |
| * | KT2440 | 3,440,348 | 0 | T | G | 53.6% | ‑5.0 / 12.6 | 32 | A19A (GCT→GCG) | CJ019_03266 | hypothetical protein |
| * | KT2440 | 690,162 | 0 | G | C | 53.3% | ‑0.6 / 14.5 | 15 | intergenic (+39/‑2420) | bauC/PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| * | KT2440 | 5,914,046 | 0 | A | C | 52.4% | 9.1 / 19.9 | 22 | K266T (AAG→ACG) | CJ019_05537 | hypothetical protein |
| * | KT2440 | 5,503,734 | 0 | T | G | 51.8% | ‑2.6 / 10.1 | 27 | L36R (CTC→CGC) | CJ019_05179 | hypothetical protein |
| * | KT2440 | 1,935,441 | 0 | A | T | 44.0% | 12.8 / 13.9 | 25 | intergenic (+62/‑143) | CJ019_01850/yjcH_1 | hypothetical protein/Inner membrane protein YjcH |
| * | KT2440 | 5,689,824 | 0 | T | G | 43.9% | 36.8 / 14.9 | 58 | R238R (CGT→CGG) | pyrC' | Dihydroorotase‑like protein |
| * | KT2440 | 5,764,969 | 0 | T | G | 42.5% | 31.7 / 11.9 | 40 | E610A (GAG→GCG) | caiT | L‑carnitine/gamma‑butyrobetaine antiporter |
| * | KT2440 | 5,999,751 | 0 | A | C | 39.1% | 52.4 / 13.4 | 46 | H260P (CAC→CCC) | CJ019_05617 | putative protein |
| * | KT2440 | 1,113,758 | 0 | C | G | 38.2% | 74.2 / 19.3 | 56 | F49L (TTC→TTG) | lptF | Lipopolysaccharide export system permeaseprotein LptF |
| * | KT2440 | 5,806,261 | 0 | T | G | 37.9% | 60.4 / 18.5 | 58 | V585G (GTG→GGG) | priA | Primosomal protein N' |
| * | KT2440 | 3,134,567 | 0 | T | G | 37.0% | 45.6 / 11.4 | 54 | L143V (TTG→GTG) | CJ019_02952 | hypothetical protein |
| * | KT2440 | 5,384,276 | 0 | C | G | 35.0% | 58.1 / 18.7 | 41 | intergenic (+539/‑319) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | KT2440 | 2,308,321 | 0 | C | G | 34.9% | 75.1 / 21.9 | 64 | A230P (GCC→CCC) | fucA | L‑fuculose phosphate aldolase |
| * | KT2440 | 828,859 | 0 | A | C | 33.8% | 88.5 / 12.7 | 70 | P90P (CCT→CCG) | CJ019_00791 | putative sulfate transporter |
| * | KT2440 | 916,696 | 0 | T | G | 33.3% | 76.0 / 11.6 | 63 | Q516P (CAG→CCG) | ltxB | Leukotoxin export ATP‑binding protein LtxB |
| * | KT2440 | 2,308,323 | 0 | T | G | 32.8% | 83.5 / 10.1 | 65 | E229A (GAG→GCG) | fucA | L‑fuculose phosphate aldolase |
| * | KT2440 | 6,126,398 | 0 | A | T | 32.6% | 58.6 / 12.4 | 52 | H430Q (CAT→CAA) | copA_4 | Copper resistance protein A |
| * | KT2440 | 2,583,316 | 0 | C | A | 32.5% | 58.7 / 11.5 | 40 | I113I (ATC→ATA) | CJ019_02435 | hypothetical protein |
| * | KT2440 | 4,350,360 | 0 | T | G | 31.7% | 185.0 / 19.9 | 121 | R28R (CGT→CGG) | CJ019_04090 | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 2748358 = | 82 (1.110) | 4 (0.060) | 4/234 | 7.0 | 5.1% | coding (1627/3147 nt) | czcA_2 | Cobalt‑zinc‑cadmium resistance protein CzcA |
| ? | KT2440 | = 2748354 | 73 (1.090) | coding (1623/3147 nt) | czcA_2 | Cobalt‑zinc‑cadmium resistance protein CzcA | |||||
| * | ? | KT2440 | = 2545747 | NA (NA) | 5 (0.070) | 5/258 | 7.0 | 6.9% | intergenic (+2217/‑1402) | PP_RS08750/bacA | tRNA‑Val/Vitamin B12 transport ATP‑binding protein BacA |
| ? | KT2440 | 3247082 = | 67 (0.900) | coding (1713/2202 nt) | mdoB_1 | Phosphoglycerol transferase I | |||||
| * | ? | KT2440 | = 5982606 | 40 (0.540) | 4 (0.060) | 4/242 | 7.2 | 9.9% | intergenic (+65/‑624) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | KT2440 | 5982798 = | 35 (0.500) | intergenic (+257/‑432) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||
| * | ? | KT2440 | = 2579692 | 63 (0.850) | 3 (0.040) | 3/258 | 8.2 | 4.1% | intergenic (+795/‑1) | PP_RS08755/CJ019_02433 | tRNA‑Asp/hypothetical protein |
| ? | KT2440 | 2618880 = | 78 (1.050) | intergenic (+1/‑563) | xerC_1/CJ019_02478 | Tyrosine recombinase XerC/hypothetical protein | |||||