mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,293,000 | 0 | A | G | 69.2% | 232.7 / 219.4 | 264 | noncoding (37/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,991 | 0 | C | T | 65.4% | 201.6 / 225.0 | 269 | noncoding (46/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,848 | 0 | A | T | 65.0% | ‑4.1 / inf | 306 | noncoding (11/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,292,810 | 0 | G | A | 54.9% | 104.0 / inf | 390 | noncoding (49/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,292,982 | 0 | A | G | 53.9% | 5.2 / inf | 265 | noncoding (55/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 448,506 | 0 | T | C | 21.1% | 774.7 / 49.1 | 327 | M396V (ATG→GTG) | cyoB | cytochrome o ubiquinol oxidase subunit I |
| Marginal new junction evidence (lowest skew 10 of 231 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | 695911 = | 0 (0.000) | 156 (0.570) +GAAGAAACAATC |
36/252 | 3.2 | 59.4% | intergenic (‑33/+2) | CXP41_RS03680/CXP41_RS03685 | tRNA‑Gln/tRNA‑Gln |
| ? | NZ_CP025268 | = 696182 | 234 (0.790) | intergenic (‑1/+379) | CXP41_RS03695/asnB | tRNA‑Met/asparagine synthase B | |||||
| * | ? | NZ_CP025268 | = 3549238 | 396 (1.330) | 51 (0.200) +TTTTTTAATGATACGGCGAC |
26/236 | 4.4 | 13.6% | coding (1519/2085 nt) | malQ | 4‑alpha‑glucanotransferase |
| ? | NZ_CP025268 | 3549259 = | 366 (1.230) | coding (1498/2085 nt) | malQ | 4‑alpha‑glucanotransferase | |||||
| * | ? | NZ_CP025268 | 4544596 = | 16 (0.050) | 40 (0.140) | 20/258 | 6.2 | 64.5% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP025268 | 4544910 = | 29 (0.100) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP025268 | = 4544604 | 18 (0.060) | 23 (0.080) | 17/258 | 7.0 | 50.1% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP025268 | = 4544900 | 29 (0.100) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP025268 | = 2717853 | 385 (1.290) | 17 (0.060) | 11/254 | 8.8 | 4.7% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NZ_CP025268 | = 2717932 | 339 (1.240) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NZ_CP025268 | 2769444 = | 349 (1.170) | 8 (0.040) | 6/188 | 9.0 | 3.4% | intergenic (‑267/+93) | abpA/yfjM | anti‑bacteriophage protein AbpA/DUF1524 domain‑containing protein |
| ? | NZ_CP025268 | = 2769435 | 214 (1.060) | intergenic (‑258/+102) | abpA/yfjM | anti‑bacteriophage protein AbpA/DUF1524 domain‑containing protein | |||||
| * | ? | NZ_CP025268 | = 339139 | 390 (1.310) | 35 (0.120) | 11/266 | 9.1 | 8.5% | coding (296/297 nt) | CXP41_RS01780 | protein YahH |
| ? | NZ_CP025268 | = 4616557 | 382 (1.330) | intergenic (+381/+39) | yjjV/yjjW | metal‑dependent hydrolase/YjjW family glycine radical enzyme activase | |||||
| * | ? | NZ_CP025268 | 4319335 = | 267 (0.900) | 27 (0.090) | 11/270 | 9.2 | 9.0% | coding (486/681 nt) | phnL | phosphonate C‑P lyase system protein PhnL |
| ? | NZ_CP025268 | 4319434 = | 287 (0.990) | coding (387/681 nt) | phnL | phosphonate C‑P lyase system protein PhnL | |||||
| * | ? | NZ_CP025268 | = 4411560 | 326 (1.100) | 12 (0.040) | 10/256 | 9.3 | 3.7% | coding (360/732 nt) | rlmB | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP025268 | = 4411623 | 318 (1.150) | coding (423/732 nt) | rlmB | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| * | ? | NZ_CP025268 | = 5601 | 233 (0.780) | 31 (0.160) +48 bp |
5/180 | 9.3 | 21.6% | intergenic (+71/+82) | yaaX/yaaA | DUF2502 domain‑containing protein/peroxide stress protein YaaA |
| ? | NZ_CP025268 | 2308958 = | 113 (0.380) | intergenic (+530/+185) | eco/mqo | serine protease inhibitor ecotin/malate dehydrogenase (quinone) | |||||