mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,292,259 | 0 | T | C | 53.1% | 27.9 / 41.3 | 32 | intergenic (+100/+44) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| * | REL606 | 2,631,772 | 0 | A | C | 37.5% | 106.0 / 15.2 | 56 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 1,747,903 | 0 | G | T | 34.4% | 181.3 / 92.3 | 93 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 1,875,483 | 0 | G | C | 34.2% | 179.4 / 129.6 | 118 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 4,393,061 | 0 | T | G | 34.0% | 87.1 / 18.9 | 47 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 2,296,329 | 0 | A | C | 33.9% | 111.5 / 25.3 | 59 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 2,197,867 | 0 | T | G | 33.3% | 65.6 / 13.6 | 36 | A47A (GCA→GCC) | cirA | ferric iron‑catecholate outer membrane transporter |
| * | REL606 | 2,563,085 | 0 | T | G | 32.6% | 72.1 / 19.5 | 46 | T193T (ACA→ACC) | yfgA | hypothetical protein |
| * | REL606 | 1,688,990 | 0 | A | C | 32.6% | 83.9 / 10.0 | 43 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 154,497 | 0 | T | G | 31.1% | 157.1 / 22.0 | 74 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 273,581 | 0 | T | G | 26.2% | 199.2 / 11.4 | 84 | G136G (GGT→GGG) | yagU | conserved inner membrane protein |
| * | REL606 | 3,492,082 | 0 | T | G | 25.8% | 149.5 / 11.4 | 62 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 4,169,232 | 0 | A | T | 25.0% | 167.0 / 10.6 | 64 | intergenic (+48/‑165) | rpoC/htrC | DNA‑directed RNA polymerase subunit beta'/heat shock protein |
| * | REL606 | 1,484,105 | 0 | A | G | 24.4% | 96.9 / 12.0 | 45 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 3,733,719 | 0 | C | G | 24.1% | 127.5 / 21.8 | 54 | G63G (GGC→GGG) | gumD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
| * | REL606 | 716,832 | 0 | T | G | 22.1% | 171.4 / 15.1 | 68 | A31A (GCA→GCC) | ECB_00663 | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039202 = | 44 (0.700) | 3 (0.060) | 3/130 | 7.7 | 4.9% | coding (493/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039549 = | 78 (1.430) | coding (146/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 2035841 = | 78 (1.240) | 3 (0.050) | 3/134 | 7.8 | 4.0% | coding (16/768 nt) | wbbD | putative glycosyltransferase WbbD |
| ? | REL606 | 2036081 = | 73 (1.300) | coding (878/1113 nt) | wbbC | putative glycosyltransferase WbbC | |||||
| * | ? | REL606 | = 3021736 | 67 (1.060) | 4 (0.070) | 3/138 | 8.0 | 7.0% | coding (949/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | = 3021921 | 44 (0.760) | coding (764/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | = 2036917 | 50 (0.790) | 3 (0.050) | 3/140 | 8.0 | 6.8% | coding (42/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | = 2037192 | 36 (0.610) | coding (939/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | = 3433388 | 52 (0.830) | 3 (0.050) | 3/150 | 8.4 | 5.5% | pseudogene (73/621 nt) | yhfS | putative enzyme; b3376_1 |
| ? | REL606 | 3433641 = | NA (NA) | noncoding (589/768 nt) | IS1 | repeat region | |||||