breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	649,069	G→A	A578V (GCG→GTG)	mrdA ←	transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2)
RA	1,305,551	A→G	I230T (ATC→ACC)	cls ←	cardiolipin synthetase
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
RA	1,540,084	A→G	I219T (ATT→ACT)	yddV ←	predicted diguanylate cyclase
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	2,131,466	(A)9→8	intergenic (‑125/+175)	gatY ← / ← fbaB	D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	3,022,018	C→T	A223T (GCA→ACA)	ECB_02821 ←	hypothetical protein
RA	3,145,707	C→T	intergenic (+38/‑157)	dnaG → / → rpoD	DNA primase/RNA polymerase sigma factor
RA	3,464,461	T→G	Y31S (TAT→TCT)	envZ ←	osmolarity sensor protein
RA	3,497,980	T→C	H19R (CAC→CGC)	glgP ←	glycogen phosphorylase
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,776,362	T→G	I235M (ATT→ATG)	ECB_03516 →	Int
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
JC	3,912,149	Δ15 bp	coding (28‑42/99 nt)	ilvL →	ilvG operon leader peptide
RA	4,163,752	T→G	I966S (ATC→AGC)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	4,202,526	T→G	K12Q (AAA→CAA)	iclR ←	DNA‑binding transcriptional repressor
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)