mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5992126 | 67 (1.480) | 3 (0.070) | 3/238 | NT | 4.6% | coding (61/1263 nt) | opdB | proline‑specific outer membrane porin D |
| ? | NC_002947 | = 5992147 | 61 (1.410) | coding (82/1263 nt) | opdB | proline‑specific outer membrane porin D | |||||
| * | ? | NC_002947 | = 5863651 | 61 (1.350) | 3 (0.070) | 3/240 | NT | 4.8% | coding (294/870 nt) | PP_5138 | LysR family transcriptional regulator |
| ? | NC_002947 | = 5863681 | 59 (1.350) | coding (264/870 nt) | PP_5138 | LysR family transcriptional regulator | |||||
| * | ? | NC_002947 | = 5814780 | 48 (1.060) | 4 (0.090) | 3/236 | NT | 7.9% | coding (1645/1737 nt) | argS | arginine‑‑tRNA ligase |
| ? | NC_002947 | = 5814790 | 47 (1.090) | coding (1655/1737 nt) | argS | arginine‑‑tRNA ligase | |||||
| * | ? | NC_002947 | 5565354 = | 64 (1.420) | 3 (0.070) | 3/238 | NT | 4.7% | coding (283/972 nt) | miaA | tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA |
| ? | NC_002947 | 5565398 = | 60 (1.390) | coding (239/972 nt) | miaA | tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA | |||||
| * | ? | NC_002947 | 5526131 = | 71 (1.570) | 3 (0.070) | 3/232 | NT | 4.1% | coding (251/636 nt) | PP_4859 | TetR family transcriptional regulator |
| ? | NC_002947 | 5526186 = | 73 (1.730) | coding (306/636 nt) | PP_4859 | TetR family transcriptional regulator | |||||
| * | ? | NC_002947 | 5383976 = | 66 (1.460) | 3 (0.070) | 3/230 | NT | 5.0% | coding (392/1671 nt) | lldP | L‑lactate permease |
| ? | NC_002947 | 5384018 = | 54 (1.290) | coding (434/1671 nt) | lldP | L‑lactate permease | |||||
| * | ? | NC_002947 | 5208193 = | 51 (1.130) | 4 (0.090) | 3/236 | NT | 7.7% | coding (564/933 nt) | PP_4589 | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | 5208223 = | 47 (1.090) | coding (534/933 nt) | PP_4589 | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
| * | ? | NC_002947 | = 5162185 | 74 (1.640) | 4 (0.090) | 3/234 | NT | 5.3% | coding (905/1245 nt) | PP_4544 | hypothetical protein |
| ? | NC_002947 | = 5162199 | 73 (1.710) | coding (919/1245 nt) | PP_4544 | hypothetical protein | |||||
| * | ? | NC_002947 | = 4508712 | 64 (1.420) | 3 (0.070) | 3/238 | NT | 4.6% | coding (113/1392 nt) | cysG | multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase |
| ? | NC_002947 | = 4508745 | 62 (1.430) | coding (80/1392 nt) | cysG | multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase | |||||
| * | ? | NC_002947 | 2752135 = | 52 (1.150) | 4 (0.090) | 3/240 | NT | 8.0% | coding (919/1278 nt) | czcC‑II | cobalt‑zinc‑cadmium resistance protein |
| ? | NC_002947 | 2752172 = | 42 (0.960) | coding (956/1278 nt) | czcC‑II | cobalt‑zinc‑cadmium resistance protein | |||||