mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,851,912 | A→G | D319G (GAC→GGC) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,635,557 | G→A | T82M (ACG→ATG) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| RA | 4,741,273 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,275 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,299 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,301 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,304 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 5,610,742 | +A | coding (106/333 nt) | emrE → | small multidrug resistance protein |
| JC | 6,098,326 | (CAAGCTGCG)2→1 | coding (811‑819/867 nt) | PP_5350 ← | RpiR family transcriptional regulator |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 22558 = | 17 (0.070) | 248 (1.040) | 121/292 | 0.3 | 93.6% | intergenic (+28/‑618) | PP_0017/PP_0018 | transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 3969310 = | NA (NA) | intergenic (+215/‑100) | PP_3498/PP_3499 | transposase/transposase | |||||
| * | ? | NC_002947 | = 22567 | 15 (0.060) | 218 (0.930) | 114/288 | 0.5 | 93.7% | intergenic (+37/‑609) | PP_0017/PP_0018 | transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 5038521 | NA (NA) | coding (19/255 nt) | PP_4444 | transposase | |||||
| * | ? | NC_002947 | = 2436610 | NA (NA) | 265 (1.170) | 99/278 | 1.0 | 100% | intergenic (+145/‑514) | PP_2134/fadB | transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
| ? | NC_002947 | = 3911641 | 0 (0.000) | intergenic (+67/‑58) | PP_3451/PP_3452 | hypothetical protein/GGDEF domain‑containing protein | |||||
| * | ? | NC_002947 | 3911640 = | 0 (0.000) | 249 (1.190) | 114/256 | 0.2 | 100% | intergenic (+66/‑59) | PP_3451/PP_3452 | hypothetical protein/GGDEF domain‑containing protein |
| ? | NC_002947 | 5218946 = | NA (NA) | intergenic (+46/‑203) | PP_4598/PP_4599 | membrane protein/transposase | |||||