mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,234,188 | 0 | G | C | 53.8% | ‑0.8 / 13.2 | 13 | intergenic (‑133/+43) | PP_4606/PP_4607 | ferric siderophore receptor/transmembrane sensor |
| * | NC_002947 | 2,092,447 | 0 | A | C | 50.0% | ‑4.4 / 12.1 | 10 | intergenic (+268/+650) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 3,222,816 | 0 | T | G | 50.0% | 16.2 / 10.5 | 32 | V205G (GTC→GGC) | oprJ | outer membrane protein OprJ |
| * | NC_002947 | 3,452,278 | 0 | A | C | 50.0% | 2.0 / 12.7 | 37 | S18R (AGC→CGC) | PP_5556 | bacteriophage lysis protein |
| * | NC_002947 | 2,868,821 | 0 | T | G | 48.0% | ‑5.7 / 11.0 | 25 | S297A (TCG→GCG) | gllR | HTH‑type transcriptional regulator GalR |
| * | NC_002947 | 5,993,916 | 0 | A | C | 47.6% | ‑5.2 / 35.5 | 21 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 4,353,698 | 0 | A | G | 38.9% | 10.7 / 16.5 | 18 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 1,622,863 | 0 | C | G | 31.2% | 18.2 / 13.1 | 16 | intergenic (‑127/+46) | PP_1417/PP_1418 | tricarboxylate transport protein TctB/tricarboxylate transport protein TctC |
| * | NC_002947 | 6,075,165 | 0 | A | C | 29.2% | 115.2 / 12.6 | 65 | V162G (GTG→GGG) | PP_5324 | two‑component system response regulator |
| * | NC_002947 | 197,572 | 0 | G | A | 27.3% | 34.1 / 10.6 | 22 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 2,007,629 | 0 | A | . | 26.7% | 34.6 / 10.5 | 15 | coding (2578/3444 nt) | PP_1786 | glycosyl transferase |
| * | NC_002947 | 197,590 | 0 | T | C | 25.0% | 40.1 / 11.0 | 24 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 2,092,230 | 0 | A | . | 23.3% | 75.0 / 22.2 | 30 | intergenic (+51/+867) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 197,089 | 0 | T | C | 23.1% | 34.9 / 10.6 | 28 | N865N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2649981 = | 19 (1.380) | 3 (0.220) | 3/260 | 0.9 | 12.3% | coding (2325/2499 nt) | PP_2316 | ABC transporter permease |
| ? | NC_002947 | = 4854308 | 24 (1.770) | coding (614/1383 nt) | hemN | oxygen‑independent coproporphyrinogen III dehydrogenase | |||||