mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,388,249 | 0 | T | C | 20.3% | 129.1 / 11.2 | 65 | T93A (ACT→GCT) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Marginal new junction evidence (lowest skew 10 of 78 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 86 (1.150) | 15 (0.220) | 14/264 | 5.6 | 18.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 59 (0.880) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 81 (1.080) | 13 (0.190) | 12/264 | 6.3 | 16.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 58 (0.870) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 221768 | NA (NA) | 12 (0.170) | 9/286 | 8.2 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 221780 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 4493397 = | 84 (1.120) | 6 (0.090) | 5/256 | 9.5 | 7.6% | intergenic (‑149/‑478) | insG/yjhB | IS4 transposase/putative transporter |
| ? | CP009273 | 4493417 = | 74 (1.140) | intergenic (‑169/‑458) | insG/yjhB | IS4 transposase/putative transporter | |||||
| * | ? | CP009273 | = 1592845 | 58 (0.770) | 6 (0.080) | 6/280 | 9.6 | 9.8% | intergenic (‑601/+29) | yneO/lsrK | pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase |
| ? | CP009273 | = 1592857 | 55 (0.780) | intergenic (‑613/+17) | yneO/lsrK | pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase | |||||
| * | ? | CP009273 | = 3938338 | NA (NA) | 17 (0.240) | 6/284 | 9.8 | 31.2% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4032171 | 39 (0.520) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 2721250 = | NA (NA) | 17 (0.240) | 6/284 | 9.8 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223539 | 46 (0.610) | 17 (0.240) | 6/284 | 9.8 | 27.8% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 1235511 = | 89 (1.190) | 6 (0.090) | 5/274 | 10.1 | 6.9% | intergenic (+106/+280) | dadX/cvrA | alanine racemase, catabolic, PLP‑binding/putative cation/proton antiporter |
| ? | CP009273 | 1235540 = | 80 (1.150) | intergenic (+135/+251) | dadX/cvrA | alanine racemase, catabolic, PLP‑binding/putative cation/proton antiporter | |||||
| * | ? | CP009273 | 834347 = | 81 (1.080) | 7 (0.100) | 5/276 | 10.1 | 8.5% | coding (317/678 nt) | ybiX | Fe(II)‑dependent oxygenase superfamily protein |
| ? | CP009273 | 834377 = | 75 (1.070) | coding (287/678 nt) | ybiX | Fe(II)‑dependent oxygenase superfamily protein | |||||