breseq  version 0.32.0b  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 444,779 C→T W440* (TGG→TAG)  cyoB ← cytochrome o ubiquinol oxidase subunit I
RA 1,138,810 G→T D338E (GAC→GAA)  rne ← fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein
RA 2,305,991 G→T Q80K (CAG→AAG)  ompC ← outer membrane porin protein C
JC 3,528,829 (GTTTTCAGCCAG)1→2 coding (399/1353 nt) envZ ← sensory histidine kinase in two‑component regulatory system with OmpR
JC 3,676,833 Δ3 bp intergenic (‑26/+155) dctA ← / ← yhjK C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 1116960 1118114 1155 36 [35] [34] 36 pyrC pyrC

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 360104 =NA (NA)107 (1.430) 78/296 0.0 NA intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 NA (NA)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
* ? CP009273 1045234 =85 (1.130)64 (0.850) 56/296 0.3 58.5% intergenic (‑34/‑55) gfcA/insA O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA
?CP009273 = 1973123 6 (0.080)intergenic (‑669/‑111) flhD/uspC flagellar class II regulon transcriptional activator, with FlhC/universal stress protein
* ? CP009273 = 104600173 (0.970)87 (1.160) 65/296 0.1 69.6% intergenic (+15/+418) insB1/cspH IS1 transposase B/stress protein, member of the CspA‑family
?CP009273 1973115 = 3 (0.040)intergenic (‑661/‑119) flhD/uspC flagellar class II regulon transcriptional activator, with FlhC/universal stress protein