mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 21.1% | 111.6 / 17.8 | 57 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 84 (0.720) | 22 (0.200) | 20/460 | 4.7 | 21.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 86 (0.790) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 93 (0.790) | 18 (0.160) | 18/460 | 5.2 | 17.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 88 (0.800) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4545906 = | 133 (1.140) | 4 (0.030) | 4/482 | 10.9 | 2.8% | coding (811/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | NC_000913 | 4546101 = | 145 (1.260) | coding (1006/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| * | ? | NC_000913 | 4311487 = | 142 (1.210) | 4 (0.030) | 4/486 | 11.0 | 2.7% | coding (556/936 nt) | alsB | D‑allose ABC transporter periplasmic binding protein |
| ? | NC_000913 | 4312701 = | 144 (1.240) | coding (291/891 nt) | alsR | d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR | |||||
| * | ? | NC_000913 | 3470143 = | 103 (0.880) | 3 (0.030) +28 bp |
3/436 | 11.0 | 2.9% | intergenic (‑290/+2) | chiA/tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | = 4177184 | 120 (1.020) | intergenic (+56/‑174) | tufB/secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit | |||||
| * | ? | NC_000913 | = 1553986 | 84 (0.760) | 6 (0.050) +GCGGTAGTC |
3/444 | 11.1 | 6.3% | coding (1684/1698 nt) | maeA | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme |
| ? | NC_000913 | 1553987 = | 97 (0.830) | coding (1683/1698 nt) | maeA | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme | |||||
| * | ? | NC_000913 | 950301 = | 105 (0.900) | 3 (0.030) | 3/468 | 11.4 | 2.9% | intergenic (+43/+39) | ycaK/pflA | putative NAD(P)H‑dependent oxidoreductase/pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase |
| ? | NC_000913 | 950331 = | 102 (0.920) | intergenic (+73/+9) | ycaK/pflA | putative NAD(P)H‑dependent oxidoreductase/pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase | |||||
| * | ? | NC_000913 | 3758791 = | 126 (1.080) | 3 (0.030) | 3/474 | 11.5 | 2.6% | coding (1071/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor |
| ? | NC_000913 | 3758996 = | 105 (0.930) | coding (866/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor | |||||
| * | ? | NC_000913 | = 3197519 | 117 (1.020) | 5 (0.040) +GGA |
3/474 | 11.5 | 4.1% | coding (2123/2841 nt) | glnE | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| ? | NC_000913 | 3197520 = | 119 (1.020) | coding (2122/2841 nt) | glnE | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase | |||||
| * | ? | NC_000913 | 1953917 = | 107 (0.910) | 3 (0.030) | 3/476 | 11.5 | 2.4% | coding (476/972 nt) | cmoB | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| ? | NC_000913 | 1954226 = | 145 (1.280) | coding (785/972 nt) | cmoB | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent | |||||