mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.6% | 83.7 / 64.6 | 89 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 951207 = | 108 (1.520) | 5 (0.070) | 5/270 | 9.1 | 4.7% | intergenic (‑127/+65) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| ? | NC_000913 | 951233 = | 100 (1.470) | intergenic (‑153/+39) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 | |||||
| * | ? | NC_000913 | 1097007 = | 79 (1.110) | 5 (0.070) | 4/276 | 9.9 | 6.1% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097172 = | NA (NA) | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096988 = | 79 (1.110) | 5 (0.070) | 4/276 | 9.9 | 6.1% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097010 = | 77 (1.110) | intergenic (+181/+555) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 3905650 | 98 (1.380) | 3 (0.050) | 3/252 | 10.0 | 3.2% | intergenic (‑53/+81) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon |
| ? | NC_000913 | = 3905672 | 95 (1.490) | intergenic (‑75/+59) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon | |||||
| * | ? | NC_000913 | = 3876111 | 73 (1.030) | 3 (0.050) | 3/262 | 10.3 | 4.3% | intergenic (+17/+29) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase |
| ? | NC_000913 | = 3876122 | 65 (0.980) | intergenic (+28/+18) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase | |||||
| * | ? | NC_000913 | 3736656 = | 90 (1.270) | 3 (0.050) | 3/262 | 10.3 | 3.4% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736652 | 85 (1.290) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | = 1104930 | 109 (1.530) | 3 (0.050) | 3/264 | 10.3 | 2.9% | intergenic (+28/‑31) | csgA/csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| ? | NC_000913 | = 1104934 | 102 (1.530) | intergenic (+32/‑27) | csgA/csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein | |||||
| * | ? | NC_000913 | = 609415 | 79 (1.110) | 3 (0.040) | 3/266 | 10.4 | 3.9% | intergenic (+238/+44) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_000913 | = 609431 | 74 (1.100) | intergenic (+254/+28) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 4332952 = | 74 (1.040) | 3 (0.040) | 3/270 | 10.5 | 4.2% | coding (321/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| ? | NC_000913 | 4333016 = | 67 (0.980) | coding (257/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR | |||||
| * | ? | NC_000913 | = 2877836 | 101 (1.420) | 3 (0.040) | 3/268 | 10.5 | 3.1% | intergenic (+218/+733) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | = 2877840 | 92 (1.360) | intergenic (+222/+729) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||