mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.6% | 43.7 / 26.9 | 51 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3222461 = | 39 (0.960) | 3 (0.080) | 3/258 | 5.9 | 7.7% | intergenic (+12/‑172) | ebgR/ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit |
| ? | NC_000913 | 3222493 = | 37 (1.000) | intergenic (+44/‑140) | ebgR/ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit | |||||
| * | ? | NC_000913 | 1715908 = | 47 (1.160) | 3 (0.080) | 3/262 | 5.9 | 6.2% | intergenic (‑19/+40) | pdxY/tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| ? | NC_000913 | 1715934 = | 48 (1.280) | intergenic (‑45/+14) | pdxY/tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 4179656 | 40 (0.990) | 3 (0.080) | 3/272 | 6.1 | 8.4% | intergenic (+73/‑340) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| ? | NC_000913 | = 4179766 | 27 (0.690) | intergenic (+183/‑230) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 | |||||
| * | ? | NC_000913 | = 2532466 | 51 (1.260) | 3 (0.080) | 3/272 | 6.1 | 5.9% | coding (58/972 nt) | cysK | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| ? | NC_000913 | = 2532494 | 47 (1.210) | coding (86/972 nt) | cysK | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 16 (0.410) | 3/272 | 6.1 | 100% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 0 (0.000) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 14 (0.360) | 3/272 | 6.1 | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1267118 = | 36 (0.890) | 3 (0.080) | 3/272 | 6.1 | 8.2% | coding (195/393 nt) | ychQ | SIRB family inner membrane protein |
| ? | NC_000913 | 1267138 = | 33 (0.850) | coding (215/393 nt) | ychQ | SIRB family inner membrane protein | |||||
| * | ? | NC_000913 | 183810 = | 35 (0.860) | 3 (0.080) | 3/272 | 6.1 | 7.9% | coding (286/387 nt) | yaeH | UPF0325 family protein |
| ? | NC_000913 | 183847 = | 36 (0.930) | coding (249/387 nt) | yaeH | UPF0325 family protein | |||||
| * | ? | NC_000913 | = 2434256 | 31 (0.760) | 3 (0.080) | 3/274 | 6.2 | 8.7% | coding (486/660 nt) | dedA | DedA family inner membrane protein |
| ? | NC_000913 | = 2434269 | 33 (0.840) | coding (473/660 nt) | dedA | DedA family inner membrane protein | |||||
| * | ? | NC_000913 | = 3424227 | NA (NA) | 5 (0.120) | 3/280 | 6.3 | NA | noncoding (2557/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3424232 | NA (NA) | noncoding (2552/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon | |||||