mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.0% | 51.2 / 35.9 | 58 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,315,391 | 0 | G | T | 29.1% | 70.8 / 25.9 | 56 | H50N (CAT→AAT) | phnO | aminoalkylphosphonate N‑acetyltransferase |
| * | NC_000913 | 2,826,629 | 0 | T | C | 26.9% | 59.0 / 31.3 | 53 | Y80H (TAT→CAT) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 730507 | NA (NA) | 4 (0.080) | 4/272 | 7.1 | 7.9% | coding (925/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730543 | 49 (0.960) | coding (961/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 1446765 | 53 (1.040) | 4 (0.080) | 3/264 | 7.6 | 6.9% | coding (519/906 nt) | feaR | transcriptional activator for tynA and feaB |
| ? | NC_000913 | = 1446820 | 58 (1.220) | coding (464/906 nt) | feaR | transcriptional activator for tynA and feaB | |||||
| * | ? | NC_000913 | = 4058302 | 64 (1.260) | 3 (0.060) | 3/266 | 7.7 | 4.8% | intergenic (‑268/‑105) | glnA/typA | glutamine synthetase/GTP‑binding protein |
| ? | NC_000913 | = 4058333 | 59 (1.240) | intergenic (‑299/‑74) | glnA/typA | glutamine synthetase/GTP‑binding protein | |||||
| * | ? | NC_000913 | = 3104382 | 55 (1.080) | 3 (0.060) | 3/268 | 7.7 | 5.5% | intergenic (+14/‑51) | yggX/mltC | oxidative damage protective factor for iron‑sulfur proteins/membrane‑bound lytic murein transglycosylase C |
| ? | NC_000913 | = 3104387 | 52 (1.080) | intergenic (+19/‑46) | yggX/mltC | oxidative damage protective factor for iron‑sulfur proteins/membrane‑bound lytic murein transglycosylase C | |||||
| * | ? | NC_000913 | = 4020535 | 47 (0.920) | 3 (0.060) | 3/270 | 7.8 | 6.7% | coding (310/1641 nt) | ubiB | regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase |
| ? | NC_000913 | = 4020568 | 39 (0.800) | coding (343/1641 nt) | ubiB | regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase | |||||
| * | ? | NC_000913 | = 1206693 | 53 (1.040) | 3 (0.060) | 3/284 | 8.1 | 5.0% | pseudogene (551/780 nt) | jayE | pseudogene, e14 prophage;Phage or Prophage Related |
| ? | NC_000913 | 1229450 = | 62 (1.220) | intergenic (+174/+33) | ycgN/hlyE | UPF0153 family cysteine cluster protein/hemolysin E | |||||