mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.4% | 65.4 / 49.9 | 72 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 42 (0.860) | 7 (0.160) | 6/250 | 5.2 | 13.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 53 (1.230) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 44 (0.900) | 5 (0.120) | 5/250 | 5.7 | 9.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 53 (1.230) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2219655 = | NA (NA) | 6 (0.130) | 5/268 | 6.1 | NA | noncoding (31/34 nt) | REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4094717 | NA (NA) | noncoding (402/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | 3083831 = | 57 (1.170) | 6 (0.130) | 4/264 | 6.5 | 10.0% | intergenic (‑34/+104) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding |
| ? | NC_000913 | 3083868 = | 55 (1.200) | intergenic (‑71/+67) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding | |||||
| * | ? | NC_000913 | 3982818 = | 33 (0.680) | 4 (0.090) | 4/266 | 6.6 | 10.5% | intergenic (+7/‑140) | proM/aslB | tRNA‑Pro/putative AslA‑specific sulfatase‑maturating enzyme |
| ? | NC_000913 | 3982838 = | 37 (0.800) | intergenic (+27/‑120) | proM/aslB | tRNA‑Pro/putative AslA‑specific sulfatase‑maturating enzyme | |||||
| * | ? | NC_000913 | = 2047464 | 47 (0.960) | 4 (0.090) | 4/266 | 6.6 | 7.7% | coding (2527/7077 nt) | yeeJ | putative adhesin |
| ? | NC_000913 | = 2047546 | 52 (1.130) | coding (2609/7077 nt) | yeeJ | putative adhesin | |||||
| * | ? | NC_000913 | = 4583137 | 51 (1.050) | 4 (0.090) | 4/270 | 6.7 | 7.9% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 44 (0.940) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 2647585 = | 38 (0.780) | 4 (0.090) | 4/270 | 6.7 | 9.7% | coding (4703/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| ? | NC_000913 | 2647605 = | 38 (0.810) | coding (4683/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein | |||||
| * | ? | NC_000913 | = 788683 | 44 (0.900) | 4 (0.090) | 4/270 | 6.7 | 8.7% | coding (155/1041 nt) | galM | aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| ? | NC_000913 | = 788692 | 42 (0.900) | coding (146/1041 nt) | galM | aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase | |||||
| * | ? | NC_000913 | 3146750 = | 45 (0.920) | 3 (0.070) | 3/260 | 7.1 | 7.5% | intergenic (‑13/+106) | yghW/yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| ? | NC_000913 | 3146776 = | 33 (0.730) | intergenic (‑39/+80) | yghW/yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family | |||||