mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.1% | 42.6 / 80.0 | 84 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423376 = | 55 (0.970) | 8 (0.140) | 6/280 | 7.1 | 19.2% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946822 | 13 (0.230) | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp | |||||
| * | ? | NC_000913 | 3423376 = | 55 (0.970) | 8 (0.140) | 6/280 | 7.1 | 12.9% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423665 = | 54 (0.970) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3423376 = | 55 (0.970) | 8 (0.140) | 5/280 | 7.6 | 12.1% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213162 | 62 (1.110) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 2443834 | NA (NA) | 5 (0.090) | 5/282 | 7.7 | NA | noncoding (46/80 nt) | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2443869 | NA (NA) | intergenic (+99/+22) | mnmC/yfcL | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme/uncharacterized protein | |||||
| * | ? | NC_000913 | 1360805 = | 67 (1.190) | 4 (0.080) | 4/266 | 7.9 | 6.3% | coding (104/1419 nt) | puuA | glutamate‑‑putrescine ligase |
| ? | NC_000913 | 1360853 = | 56 (1.060) | coding (56/1419 nt) | puuA | glutamate‑‑putrescine ligase | |||||
| * | ? | NC_000913 | 3365206 = | 59 (1.050) | 4 (0.070) | 4/272 | 8.0 | 6.8% | pseudogene (22/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 |
| ? | NC_000913 | 3365242 = | 54 (1.000) | pseudogene (58/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 | |||||
| * | ? | NC_000913 | 2566839 = | 45 (0.800) | 4 (0.070) | 4/270 | 8.0 | 9.1% | coding (46/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | NC_000913 | 2566937 = | 37 (0.690) | coding (1171/1227 nt) | eutH | ethanolamine transporter | |||||
| * | ? | NC_000913 | = 368554 | 60 (1.060) | 4 (0.070) | 4/270 | 8.0 | 6.5% | intergenic (‑134/‑57) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase |
| ? | NC_000913 | = 368583 | 58 (1.080) | intergenic (‑163/‑28) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase | |||||
| * | ? | NC_000913 | 273987 = | NA (NA) | 5 (0.090) | 4/272 | 8.0 | NA | noncoding (1163/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274057 = | NA (NA) | noncoding (1093/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3987308 | 53 (0.940) | 4 (0.070) | 4/274 | 8.1 | 7.1% | coding (575/1197 nt) | hemY | putative protoheme IX synthesis protein |
| ? | NC_000913 | = 3987325 | 54 (0.990) | coding (558/1197 nt) | hemY | putative protoheme IX synthesis protein | |||||