mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.9% | 103.7 / 25.7 | 67 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4171607 | 31 (0.590) | 8 (0.160) | 7/272 | 4.8 | 21.2% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3946688 | 67 (1.270) | 8 (0.160) | 7/272 | 4.8 | 11.1% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 8 (0.160) | 7/272 | 4.8 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228744 | 36 (0.680) | 8 (0.160) | 7/272 | 4.8 | 18.8% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 4080020 = | NA (NA) | 5 (0.100) | 5/270 | 5.6 | NA | noncoding (1/98 nt) | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4080050 = | NA (NA) | noncoding (31/98 nt) | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2349901 = | 43 (0.810) | 4 (0.080) | 4/264 | 6.0 | 9.0% | intergenic (+8/+34) | yfaH/glpQ | pseudogene/periplasmic glycerophosphodiester phosphodiesterase |
| ? | NC_000913 | 2349927 = | 41 (0.830) | intergenic (+34/+8) | yfaH/glpQ | pseudogene/periplasmic glycerophosphodiester phosphodiesterase | |||||
| * | ? | NC_000913 | = 3961342 | 74 (1.400) | 4 (0.080) | 4/270 | 6.1 | 5.3% | coding (666/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase |
| ? | NC_000913 | = 3961350 | 72 (1.430) | coding (674/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase | |||||
| * | ? | NC_000913 | 3361049 = | 62 (1.170) | 3 (0.060) | 3/264 | 6.6 | 4.9% | intergenic (+433/‑127) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| ? | NC_000913 | 3361101 = | 58 (1.180) | intergenic (+485/‑75) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein | |||||
| * | ? | NC_000913 | 2667128 = | 32 (0.600) | 3 (0.060) | 3/266 | 6.6 | 10.9% | coding (719/1140 nt) | hcaT | putative 3‑phenylpropionic transporter |
| ? | NC_000913 | = 3026941 | 19 (0.380) | coding (1176/1320 nt) | guaD | guanine deaminase | |||||
| * | ? | NC_000913 | 1417458 = | 49 (0.930) | 3 (0.060) | 3/264 | 6.6 | 6.2% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| ? | NC_000913 | 1417483 = | 45 (0.920) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein | |||||