mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.4% | 48.5 / 45.3 | 61 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3877665 | NA (NA) | 4 (0.060) | 4/270 | 9.2 | NA | noncoding (80/98 nt) | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3877676 | NA (NA) | noncoding (91/98 nt) | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3150551 = | NA (NA) | 3 (0.050) | 3/262 | 9.7 | NA | intergenic (+5/+267) | yghA/exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| ? | NC_000913 | 3150580 = | NA (NA) | noncoding (27/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | |||||
| * | ? | NC_000913 | 3948426 = | 145 (2.180) | 3 (0.050) | 3/266 | 9.8 | 2.1% | intergenic (+2/+23) | yifE/yifB | UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator |
| ? | NC_000913 | 3948449 = | 142 (2.290) | coding (1521/1521 nt) | yifB | magnesium chelatase family protein and putative transcriptional regulator | |||||
| * | ? | NC_000913 | 3643087 = | 48 (0.720) | 3 (0.050) | 3/268 | 9.9 | 6.0% | coding (46/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3643107 = | 48 (0.770) | coding (26/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 3227830 | 63 (0.950) | 3 (0.050) | 3/268 | 9.9 | 4.7% | coding (30/1071 nt) | ygjJ | putative periplasmic protein |
| ? | NC_000913 | = 3227835 | 62 (0.990) | coding (35/1071 nt) | ygjJ | putative periplasmic protein | |||||
| * | ? | NC_000913 | = 2476567 | 70 (1.050) | 3 (0.050) | 3/268 | 9.9 | 4.3% | intergenic (+57/‑17) | torI/pawZ | response regulator inhibitor for tor operon/tRNA‑OTHER |
| ? | NC_000913 | = 2476585 | 66 (1.050) | pseudogene (2/15 nt) | pawZ | tRNA‑OTHER | |||||
| * | ? | NC_000913 | = 2304985 | NA (NA) | 3 (0.050) | 3/270 | 9.9 | 3.4% | noncoding (569/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305015 | 89 (1.340) | noncoding (599/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 2034871 | 69 (1.040) | 3 (0.050) | 3/268 | 9.9 | 4.3% | pseudogene (159/531 nt) | yedS | pseudogene, outer membrane protein homology; putative outer membrane protein |
| ? | NC_000913 | = 2034893 | 67 (1.070) | pseudogene (181/531 nt) | yedS | pseudogene, outer membrane protein homology; putative outer membrane protein | |||||
| * | ? | NC_000913 | = 1436228 | 58 (0.870) | 3 (0.050) | 3/268 | 9.9 | 5.2% | coding (666/1134 nt) | ompN | outer membrane pore protein N, non‑specific |
| ? | NC_000913 | = 1436244 | 55 (0.880) | coding (650/1134 nt) | ompN | outer membrane pore protein N, non‑specific | |||||
| * | ? | NC_000913 | 1097456 = | 10 (0.150) | 3 (0.050) | 3/268 | 9.9 | 24.6% | intergenic (+627/+109) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097476 = | 9 (0.140) | intergenic (+647/+89) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||