mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,286,965 | 0 | A | G | 23.3% | 86.1 / 11.8 | 65 | intergenic (+439/+101) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| Marginal new junction evidence (lowest skew 10 of 93 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423821 = | NA (NA) | 8 (0.110) | 6/272 | 9.5 | 5.2% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946687 | 152 (1.940) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 7 (0.110) +24 bp |
4/236 | 9.7 | NA | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences |
| ? | NC_000913 | = 4460499 | NA (NA) | noncoding (84/84 nt) | REP338 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 7 (0.110) +24 bp |
4/236 | 9.7 | NA | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences |
| ? | NC_000913 | = 4373296 | NA (NA) | noncoding (99/99 nt) | RIP328 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 6 (0.090) +24 bp |
4/236 | 9.7 | 7.1% | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences |
| ? | NC_000913 | 4326252 = | 95 (1.210) | noncoding (450/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 7 (0.110) +24 bp |
4/236 | 9.7 | 9.6% | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences |
| ? | NC_000913 | 4326152 = | 79 (1.010) | noncoding (350/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 7 (0.110) +24 bp |
4/236 | 9.7 | 12.2% | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences |
| ? | NC_000913 | 4326052 = | 61 (0.780) | noncoding (250/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 7 (0.110) +24 bp |
4/236 | 9.7 | 14.0% | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences |
| ? | NC_000913 | 4325952 = | 52 (0.660) | noncoding (150/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 7 (0.110) +24 bp |
4/236 | 9.7 | NA | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences |
| ? | NC_000913 | 4325852 = | NA (NA) | noncoding (50/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 4318000 | NA (NA) | 7 (0.110) +24 bp |
4/236 | 9.7 | NA | noncoding (83/83 nt) | REP323 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | 4325806 = | NA (NA) | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 4285334 | NA (NA) | 7 (0.110) +24 bp |
4/236 | 9.7 | NA | noncoding (34/77 nt) | REP320 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | 4325806 = | NA (NA) | noncoding (4/583 nt) | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences | |||||