mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 39 (1.010) | 4 (0.120) | 4/252 | 4.4 | 11.0% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 30 (0.870) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 3946823 | 6 (0.160) | 4 (0.100) | 4/280 | 4.9 | 15.4% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4171800 | 38 (1.000) | intergenic (+45/‑256) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 4 (0.100) | 4/280 | 4.9 | 9.6% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171802 | 38 (0.980) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 1207790 = | 44 (1.140) | 4 (0.120) | 3/252 | 5.0 | 10.3% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 31 (0.900) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3567518 = | 49 (1.270) | 3 (0.080) | 3/272 | 5.3 | 6.0% | coding (515/1434 nt) | glgA | glycogen synthase |
| ? | NC_000913 | 3567557 = | 47 (1.270) | coding (476/1434 nt) | glgA | glycogen synthase | |||||
| * | ? | NC_000913 | = 2291205 | 48 (1.240) | 3 (0.080) | 3/270 | 5.3 | 6.5% | noncoding (55/199 nt) | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2549481 | 40 (1.090) | noncoding (18/98 nt) | RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 2291205 | 48 (1.240) | 3 (0.080) | 3/270 | 5.3 | 7.2% | noncoding (55/199 nt) | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | 2538613 = | 32 (0.870) | noncoding (81/98 nt) | RIP174 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 2291205 | 48 (1.240) | 3 (0.080) | 3/270 | 5.3 | 6.3% | noncoding (55/199 nt) | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2291216 | 44 (1.200) | noncoding (66/199 nt) | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 610141 | 48 (1.240) | 3 (0.080) | 3/270 | 5.3 | 6.1% | noncoding (25/98 nt) | RIP54 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP54 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2291198 | 46 (1.250) | noncoding (48/199 nt) | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4171802 | 38 (0.980) | 7 (0.180) | 3/280 | 5.4 | 14.2% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213161 | 47 (1.230) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||