mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 58 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 15 (0.290) | 12/278 | 4.0 | 19.7% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171802 | 62 (1.170) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | = 3946823 | 10 (0.190) | 14 (0.270) | 8/278 | 5.5 | 28.0% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4171800 | 62 (1.190) | intergenic (+45/‑256) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 4295831 = | NA (NA) | 5 (0.130) | 3/204 | 6.3 | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296395 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3877682 | NA (NA) | 4 (0.090) +24 bp |
4/234 | 6.5 | NA | noncoding (98/98 nt) | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470517 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| * | ? | NC_000913 | 3774235 = | NA (NA) | 4 (0.090) +24 bp |
4/234 | 6.5 | NA | noncoding (1/99 nt) | RIP271 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470517 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| * | ? | NC_000913 | 3598396 = | NA (NA) | 4 (0.090) +24 bp |
4/234 | 6.5 | NA | noncoding (1/99 nt) | RIP259 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP259 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470517 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| * | ? | NC_000913 | = 3150693 | 58 (1.100) | 4 (0.090) +24 bp |
4/234 | 6.5 | 7.7% | noncoding (142/255 nt) | RIP222 (repetitive extragenic palindromic) element, contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element, contains 5 REP sequences and 2 IHF sites |
| ? | NC_000913 | = 4470517 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| * | ? | NC_000913 | 2654968 = | NA (NA) | 4 (0.090) +24 bp |
4/234 | 6.5 | NA | noncoding (1/97 nt) | RIP183 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470517 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| * | ? | NC_000913 | 1691425 = | NA (NA) | 4 (0.090) +24 bp |
4/234 | 6.5 | NA | noncoding (1/97 nt) | RIP126 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP126 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470517 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| * | ? | NC_000913 | 1113417 = | NA (NA) | 4 (0.090) +24 bp |
4/234 | 6.5 | NA | noncoding (1/98 nt) | RIP97 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP97 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470517 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||