mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 38 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,811,099 | 0 | C | T | 59.1% | 38.7 / 89.3 | 66 | Q56* (CAG→TAG) | tcyP | cystine/sulfocysteine:cation symporter |
| * | NC_000913 | 2,990,212 | 0 | G | A | 58.9% | 43.0 / 102.7 | 73 | S50L (TCA→TTA) | yqeK | protein YqeK |
| * | NC_000913 | 3,335,773 | 0 | G | A | 56.2% | 25.1 / 62.3 | 48 | A241V (GCG→GTG) | murA | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| * | NC_000913 | 3,440,194 | 0 | C | A | 52.8% | 8.6 / 104.7 | 53 | G279V (GGT→GTT) | rpoA | RNA polymerase subunit alpha |
| * | NC_000913 | 1,811,208 | 0 | T | C | 50.0% | 2.1 / 115.5 | 70 | V92A (GTT→GCT) | tcyP | cystine/sulfocysteine:cation symporter |
| * | NC_000913 | 214,885 | 0 | C | T | 47.4% | 3.5 / 56.1 | 38 | T18I (ACC→ATC) | arfB | peptidyl‑tRNA hydrolase, ribosome rescue factor |
| * | NC_000913 | 3,423,287 | 0 | G | C | 45.5% | 14.9 / 14.4 | 22 | intergenic (+93/+136) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.4% | 63.8 / 190.6 | 129 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 624,589 | 0 | T | C | 42.9% | 37.7 / 96.5 | 70 | intergenic (‑79/‑296) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
| * | NC_000913 | 3,213,803 | 0 | T | C | 40.3% | 45.2 / 89.2 | 67 | S253P (TCT→CCT) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | NC_000913 | 3,829,233 | 0 | C | A | 38.9% | 49.4 / 40.5 | 36 | L97M (CTG→ATG) | xanP | xanthine:H(+) symporter XanP |
| * | NC_000913 | 380,013 | 0 | G | . | 38.2% | 80.9 / 52.7 | 34 | intergenic (‑132/+56) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| * | NC_000913 | 3,980,951 | 1 | . | G | 34.4% | 31.8 / 59.8 | 32 | coding (65/1386 nt) | yifK | putative transporter YifK |
| * | NC_000913 | 12,086 | 0 | C | T | 34.1% | 52.4 / 44.4 | 44 | intergenic (‑300/‑77) | yaaI/dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| * | NC_000913 | 3,948,799 | 1 | . | G | 34.0% | 56.9 / 93.7 | 50 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| * | NC_000913 | 2,406,141 | 0 | A | G | 33.9% | 76.3 / 68.7 | 65 | R167R (CGT→CGC) | lrhA | DNA‑binding transcriptional dual regulator LrhA |
| * | NC_000913 | 3,816,579 | 0 | G | A | 33.3% | 60.0 / 49.3 | 48 | intergenic (‑30/‑97) | rph/yicC | truncated RNase PH/UPF0701 family protein YicC |
| * | NC_000913 | 1,562,085 | 0 | C | T | 32.8% | 78.2 / 59.3 | 61 | A133T (GCA→ACA) | ddpA | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,907,399 | 0 | C | T | 32.8% | 80.6 / 61.9 | 61 | E13K (GAG→AAG) | cspC | stress protein, member of the CspA family |
| * | NC_000913 | 213,341 | 0 | A | G | 32.6% | 83.8 / 18.2 | 46 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |