mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,950,449 | 0 | C | A | 34.9% | 174.1 / 151.9 | 146 | intergenic (+29/‑58) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.8% | 509.2 / 192.5 | 291 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 767 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 275149 | NA (NA) | 47 (0.330) | 35/198 | 7.0 | 25.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 678279 = | 135 (0.940) | coding (865/1428 nt) | djlB | putative HscC co‑chaperone, uncharacterized J domain‑containing protein | |||||
| * | ? | NC_000913 | = 1207805 | 113 (0.780) | 21 (0.170) | 17/166 | 10.9 | 18.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 92 (0.760) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 112 (0.780) | 18 (0.150) | 16/166 | 11.3 | 15.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 96 (0.790) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 678279 = | 135 (0.940) | 36 (0.250) | 21/198 | 11.4 | 21.1% | coding (865/1428 nt) | djlB | putative HscC co‑chaperone, uncharacterized J domain‑containing protein |
| ? | NC_000913 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2304902 | NA (NA) | 28 (0.290) +33 bp |
10/132 | 11.7 | NA | noncoding (486/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305065 | NA (NA) | noncoding (649/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 4037450 | NA (NA) | 36 (0.270) | 17/184 | 12.2 | 17.7% | intergenic (+115/‑69) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4168568 | 180 (1.250) | intergenic (+121/‑73) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 3943624 | NA (NA) | 36 (0.270) | 17/184 | 12.2 | 54.8% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037457 | 32 (0.220) | intergenic (+122/‑62) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 551512 | NA (NA) | 10 (0.110) +35 bp |
8/128 | 12.6 | 8.1% | intergenic (+180/+15) | ybcF/purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| ? | NC_000913 | 4148370 = | 175 (1.210) | intergenic (‑53/+162) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 61 (0.450) | 16/186 | 12.8 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 32 (0.240) | 15/184 | 13.1 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||