mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.4% | 619.4 / 282.3 | 410 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,470,958 | 0 | G | T | 21.2% | 457.3 / 105.5 | 199 | intergenic (‑45/+28) | ridA/pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| * | NC_000913 | 443,022 | 0 | G | A | 20.4% | 369.6 / 90.7 | 181 | intergenic (+25/+29) | thiI/yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| * | NC_000913 | 3,781,152 | 0 | A | G | 20.4% | 282.5 / 19.7 | 144 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 443,023 | 0 | T | C | 20.2% | 383.7 / 92.1 | 188 | intergenic (+26/+28) | thiI/yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| Marginal new junction evidence (lowest skew 10 of 1097 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 107 (1.060) +44 bp |
13/110 | 10.7 | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2916574 | 147 (0.810) | 37 (0.200) | 32/198 | 10.9 | 20.1% | coding (1518/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| ? | NC_000913 | = 3584195 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 2304902 | NA (NA) | 50 (0.410) +33 bp |
15/132 | 12.1 | NA | noncoding (486/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305065 | NA (NA) | noncoding (649/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4201782 = | 194 (1.070) | 26 (0.170) | 17/164 | 14.2 | 14.0% | intergenic (‑94/‑144) | zraP/zraS | Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR |
| ? | NC_000913 | 4201828 = | 160 (1.070) | intergenic (‑140/‑98) | zraP/zraS | Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 108 (0.640) | 21/186 | 14.2 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 279163 = | NA (NA) | 46 (0.250) | 23/198 | 14.2 | 23.8% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2916574 | 147 (0.810) | coding (1518/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY | |||||
| * | ? | NC_000913 | = 411214 | 224 (1.240) | 36 (0.350) +42 bp |
8/114 | 14.3 | 35.7% | noncoding (137/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 4296280 | 1 (0.010) | noncoding (446/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 411214 | 224 (1.240) | 36 (0.350) +42 bp |
8/114 | 14.3 | 21.8% | noncoding (137/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 4295941 | NA (NA) | noncoding (107/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 274213 | NA (NA) | 52 (0.300) | 21/188 | 14.3 | NA | noncoding (937/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274218 | NA (NA) | noncoding (932/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 4296280 | 1 (0.010) | 36 (0.340) +41 bp |
8/116 | 14.6 | 98.4% | noncoding (446/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | = 4296433 | NA (NA) | noncoding (599/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||