mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,386,862 | 0 | G | A | 39.1% | 20.3 / 16.1 | 23 | intergenic (+31/‑72) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 3,364,396 | 0 | A | T | 36.4% | 29.2 / 11.9 | 23 | P530P (CCA→CCT) | yhcD | putative outer membrane fimbrial subunit usher protein |
| * | NC_000913 | 4,101,514 | 0 | G | T | 30.6% | 75.7 / 13.1 | 36 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase, Mn/2‑keto‑3‑deoxy‑D‑gluconate transporter |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.8% | 81.4 / 46.9 | 57 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,093,139 | 0 | C | A | 28.9% | 65.6 / 11.0 | 38 | V100V (GTG→GTT) | rhaM | L‑rhamnose mutarotase |
| * | NC_000913 | 1,825,031 | 0 | C | T | 21.9% | 66.8 / 10.6 | 32 | intergenic (‑94/+109) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| Marginal new junction evidence (lowest skew 10 of 61 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 123306 | 70 (1.590) | 10 (0.240) | 8/290 | 2.9 | 13.3% | coding (290/2664 nt) | aceE | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| ? | NC_000913 | = 123397 | 64 (1.520) | coding (381/2664 nt) | aceE | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding | |||||
| * | ? | NC_000913 | 1819326 = | 34 (0.770) | 6 (0.140) | 6/288 | 3.5 | 14.1% | coding (122/843 nt) | chbR | repressor of chb operon for N,N'‑diacetylchitobiose utilization |
| ? | NC_000913 | 1819447 = | 41 (0.980) | coding (1/843 nt) | chbR | repressor of chb operon for N,N'‑diacetylchitobiose utilization | |||||
| * | ? | NC_000913 | = 243009 | 43 (0.970) | 8 (0.190) | 6/290 | 3.5 | 13.9% | coding (295/2445 nt) | fadE | acyl coenzyme A dehydrogenase |
| ? | NC_000913 | = 243192 | 58 (1.380) | coding (112/2445 nt) | fadE | acyl coenzyme A dehydrogenase | |||||
| * | ? | NC_000913 | = 3615500 | 46 (1.040) | 6 (0.140) | 5/286 | 3.8 | 11.0% | coding (260/945 nt) | nikB | nickel ABC transporter permease |
| ? | NC_000913 | = 3615684 | 54 (1.300) | coding (444/945 nt) | nikB | nickel ABC transporter permease | |||||
| * | ? | NC_000913 | = 1387098 | 41 (0.930) | 6 (0.140) | 5/292 | 3.9 | 15.1% | coding (379/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | NC_000913 | = 1387248 | 28 (0.660) | coding (529/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||
| * | ? | NC_000913 | = 781637 | 36 (0.820) | 4 (0.100) | 4/278 | 4.1 | 9.7% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 781702 | 42 (1.040) | intergenic (+50/‑383) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | = 4125740 | 61 (1.380) | 4 (0.100) | 4/286 | 4.2 | 9.1% | coding (1071/2199 nt) | priA | Primosome factor n' (replication factor Y) |
| ? | NC_000913 | = 4126135 | 23 (0.550) | coding (676/2199 nt) | priA | Primosome factor n' (replication factor Y) | |||||
| * | ? | NC_000913 | 4096897 = | 56 (1.270) | 4 (0.100) | 4/284 | 4.2 | 6.3% | coding (552/1470 nt) | rhaB | rhamnulokinase |
| ? | NC_000913 | 4097035 = | 66 (1.600) | coding (414/1470 nt) | rhaB | rhamnulokinase | |||||
| * | ? | NC_000913 | = 2001448 | 46 (1.040) | 4 (0.100) | 4/286 | 4.2 | 9.5% | coding (342/720 nt) | fliA | RNA polymerase, sigma 28 (sigma F) factor |
| ? | NC_000913 | = 2001557 | 33 (0.800) | coding (233/720 nt) | fliA | RNA polymerase, sigma 28 (sigma F) factor | |||||
| * | ? | NC_000913 | 266341 = | 21 (0.480) | 4 (0.100) | 4/286 | 4.2 | 11.6% | coding (213/444 nt) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| ? | NC_000913 | 266549 = | 41 (0.990) | coding (5/444 nt) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage | |||||