mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,522 | 0 | C | G | 25.0% | 100.4 / 22.6 | 67 | L29V (CTG→GTG) | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,532 | 0 | A | T | 21.6% | 142.3 / 11.5 | 75 | H32L (CAT→CTT) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 97 (0.790) | 31 (0.270) | 28/486 | 3.4 | 27.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 77 (0.670) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 87 (0.710) | 26 (0.230) | 23/486 | 4.2 | 24.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 77 (0.670) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 3621805 | NA (NA) | 11 (0.090) | 6/512 | 10.1 | 100% | coding (2614/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3621921 = | 0 (0.000) | coding (2730/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 4162515 | 141 (1.150) | 6 (0.050) | 5/506 | 10.6 | 4.1% | coding (756/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162526 | 140 (1.170) | coding (745/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||
| * | ? | NC_000913 | 734183 = | 86 (0.700) | 11 (0.090) | 5/512 | 10.6 | 11.5% | pseudogene (51/1521 nt) | rhsO | pseudogene, Rhs family |
| ? | NC_000913 | = 3621805 | NA (NA) | coding (2614/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 4542690 | 83 (0.680) | 4 (0.030) | 4/500 | 11.1 | 4.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 95 (0.800) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2794383 = | 119 (0.970) | 4 (0.030) | 4/502 | 11.1 | 3.5% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | NC_000913 | 2794419 = | 104 (0.870) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | NC_000913 | 3768227 = | 373 (3.040) | 4 (0.030) | 4/512 | 11.3 | 1.1% | coding (51/462 nt) | yibG | TPR‑like repeat protein |
| ? | NC_000913 | 3768236 = | 343 (2.820) | coding (60/462 nt) | yibG | TPR‑like repeat protein | |||||
| * | ? | NC_000913 | = 3766845 | 289 (2.350) | 4 (0.030) | 4/518 | 11.3 | 1.4% | coding (509/843 nt) | yibA | putative immunity protein for polymorphic toxin RhsA; HEAT‑domain protein; lethality reduction protein |
| ? | NC_000913 | 3766849 = | 285 (2.320) | coding (513/843 nt) | yibA | putative immunity protein for polymorphic toxin RhsA; HEAT‑domain protein; lethality reduction protein | |||||
| * | ? | NC_000913 | 732312 = | 110 (0.900) | 11 (0.090) | 4/512 | 11.3 | 9.2% | coding (2730/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3621805 | NA (NA) | coding (2614/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||