mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 63 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 73 (0.950) | 3 (0.040) | 3/246 | NT | 3.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 82 (1.140) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4534380 = | 95 (1.230) | 2 (0.030) | 3/256 | NT | 2.2% | intergenic (‑327/+50) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | 4534391 = | 88 (1.170) | intergenic (‑338/+39) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4514183 | 82 (1.060) | 3 (0.040) | 3/262 | NT | 3.6% | coding (126/903 nt) | fecB | ferric citrate ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 4514201 | 80 (1.040) | coding (108/903 nt) | fecB | ferric citrate ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 4357137 | 97 (1.260) | 3 (0.040) | 3/254 | NT | 3.0% | coding (1481/2148 nt) | cadA | lysine decarboxylase, acid‑inducible |
| ? | NC_000913 | = 4357143 | 98 (1.320) | coding (1475/2148 nt) | cadA | lysine decarboxylase, acid‑inducible | |||||
| * | ? | NC_000913 | 4320612 = | 72 (0.930) | 3 (0.040) | 3/254 | NT | 4.0% | coding (52/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit |
| ? | NC_000913 | 4320644 = | 76 (1.020) | coding (20/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||
| * | ? | NC_000913 | 4286330 = | 69 (0.890) | 3 (0.040) | 3/260 | NT | 4.3% | coding (1042/1959 nt) | acs | acetyl‑CoA synthetase |
| ? | NC_000913 | 4286367 = | 67 (0.880) | coding (1005/1959 nt) | acs | acetyl‑CoA synthetase | |||||
| * | ? | NC_000913 | 4239611 = | 83 (1.070) | 3 (0.040) | 3/258 | NT | 3.3% | coding (1978/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein |
| ? | NC_000913 | 4239661 = | 97 (1.280) | coding (2028/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein | |||||
| * | ? | NC_000913 | = 4123819 | 78 (1.010) | 3 (0.040) | 3/250 | NT | 3.7% | coding (638/1026 nt) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon |
| ? | NC_000913 | = 4123864 | 83 (1.130) | coding (593/1026 nt) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon | |||||
| * | ? | NC_000913 | 4083704 = | 79 (1.020) | 3 (0.040) | 3/252 | NT | 4.0% | coding (2119/3051 nt) | fdoG | formate dehydrogenase‑O, large subunit |
| ? | NC_000913 | 4083730 = | 70 (0.950) | coding (2093/3051 nt) | fdoG | formate dehydrogenase‑O, large subunit | |||||
| * | ? | NC_000913 | 3975245 = | 78 (1.010) | 4 (0.050) | 4/258 | NT | 5.0% | coding (100/1131 nt) | wecE | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| ? | NC_000913 | 3975274 = | 77 (1.020) | coding (129/1131 nt) | wecE | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase | |||||