mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 47 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4632991 | 296 (1.050) | 3 (0.010) | 3/254 | NT | 1.0% | coding (232/327 nt) | trpR | transcriptional repressor, tryptophan‑binding |
| ? | NC_000913 | = 4633044 | 291 (1.090) | coding (285/327 nt) | trpR | transcriptional repressor, tryptophan‑binding | |||||
| * | ? | NC_000913 | = 4534139 | 328 (1.170) | 9 (0.030) | 6/248 | NT | 2.9% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 303 (1.170) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4384575 = | 294 (1.050) | 3 (0.010) | 3/258 | NT | 1.0% | coding (737/1503 nt) | yjeM | putative transporter |
| ? | NC_000913 | 4384614 = | 283 (1.050) | coding (776/1503 nt) | yjeM | putative transporter | |||||
| * | ? | NC_000913 | = 4228729 | 294 (1.050) | 3 (0.010) | 3/258 | NT | 1.0% | coding (999/1632 nt) | yjbB | putative Na+/Pi‑cotransporter |
| ? | NC_000913 | = 4228761 | 291 (1.080) | coding (1031/1632 nt) | yjbB | putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913 | 4027518 = | 271 (0.970) | 8 (0.030) | 8/254 | NT | 3.1% | noncoding (197/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 4027550 = | 249 (0.940) | noncoding (229/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 3811039 = | 1116 (3.980) | 5 (0.020) | 5/254 | NT | 0.49% | coding (114/810 nt) | mutM | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| ? | NC_000913 | 3811133 = | 962 (3.620) | coding (20/810 nt) | mutM | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||
| * | ? | NC_000913 | = 3795026 | 904 (3.220) | 17 (0.060) | 12/252 | NT | 1.9% | coding (98/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_000913 | = 3795059 | 869 (3.300) | coding (131/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | NC_000913 | 3787895 = | 808 (2.880) | 4 (0.020) | 4/248 | NT | 0.53% | coding (1058/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor |
| ? | NC_000913 | = 3787891 | 763 (2.940) | coding (1054/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||
| * | ? | NC_000913 | = 3786895 | 762 (2.720) | 11 (0.040) | 11/248 | NT | 1.5% | coding (58/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor |
| ? | NC_000913 | = 3786902 | 768 (2.960) | coding (65/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||
| * | ? | NC_000913 | 3783554 = | 927 (3.300) | 8 (0.030) | 6/256 | NT | 0.89% | coding (108/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| ? | NC_000913 | 3783583 = | 895 (3.340) | coding (79/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) | |||||