mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 28.6% | 38.0 / 15.3 | 35 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 20.0% | 113.9 / 17.1 | 66 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 98 (0.570) | 22 (0.190) | 4/352 | 11.6 | 26.9% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 52 (0.440) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 279163 = | NA (NA) | 101 (0.590) | 6/512 | 13.3 | 49.5% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2760086 | 103 (0.600) | coding (1102/1410 nt) | yfjI | CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 3 (0.020) | 3/434 | 14.0 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 3484544 = | 164 (0.950) | 4 (0.020) | 4/492 | 14.2 | 2.5% | coding (55/870 nt) | prkB | putative phosphoribulokinase |
| ? | NC_000913 | = 3484540 | 161 (0.980) | coding (51/870 nt) | prkB | putative phosphoribulokinase | |||||
| * | ? | NC_000913 | 2432138 = | 134 (0.780) | 4 (0.020) | 4/498 | 14.3 | 2.9% | coding (805/1269 nt) | folC | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase |
| ? | NC_000913 | 2432162 = | 139 (0.830) | coding (781/1269 nt) | folC | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase | |||||
| * | ? | NC_000913 | = 835381 | 130 (0.760) | 4 (0.020) | 4/496 | 14.3 | 3.0% | coding (134/963 nt) | ybiB | putative family 3 glycosyltransferase |
| ? | NC_000913 | = 835466 | 136 (0.820) | coding (219/963 nt) | ybiB | putative family 3 glycosyltransferase | |||||
| * | ? | NC_000913 | = 3240618 | 177 (1.030) | 4 (0.020) | 4/506 | 14.5 | 2.2% | coding (675/1245 nt) | sstT | sodium:serine/threonine symporter |
| ? | NC_000913 | 3240623 = | 177 (1.040) | coding (680/1245 nt) | sstT | sodium:serine/threonine symporter | |||||
| * | ? | NC_000913 | = 3789844 | 559 (3.370) | 20 (0.120) +ACGATT |
3/482 | 14.8 | 3.5% | coding (238/1035 nt) | waaH | LPS(HepIII)‑glucuronic acid glycosyltransferase |
| ? | NC_000913 | 3789845 = | 563 (3.280) | coding (237/1035 nt) | waaH | LPS(HepIII)‑glucuronic acid glycosyltransferase | |||||
| * | ? | NC_000913 | 4558302 = | 160 (0.930) | 3 (0.020) | 3/488 | 14.9 | 1.9% | intergenic (‑13/+52) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | NC_000913 | 4558349 = | 150 (0.920) | intergenic (‑60/+5) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | = 3730312 | 529 (3.180) | 26 (0.150) +GCCGTA |
3/484 | 14.9 | 4.7% | coding (454/1323 nt) | xylA | D‑xylose isomerase |
| ? | NC_000913 | 3730313 = | 543 (3.160) | coding (453/1323 nt) | xylA | D‑xylose isomerase | |||||