mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 80 (0.810) | 18 (0.190) | 17/488 | 4.5 | 18.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 80 (0.860) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 82 (0.830) | 10 (0.110) | 10/488 | 6.6 | 11.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 80 (0.860) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 3619461 | 21 (0.210) | 5 (0.050) | 5/498 | 9.0 | 4.7% | coding (270/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3762271 | 182 (1.920) | coding (89/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 729682 | 67 (0.680) | 5 (0.050) | 3/498 | 10.2 | 10.5% | coding (100/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3619450 | 21 (0.220) | coding (259/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3850663 | 92 (0.960) | 7 (0.070) +CAG |
3/500 | 10.3 | 7.0% | coding (64/591 nt) | uhpA | response regulator in two‑component regulatory system wtih UhpB |
| ? | NC_000913 | 3850664 = | 93 (0.940) | coding (63/591 nt) | uhpA | response regulator in two‑component regulatory system wtih UhpB | |||||
| * | ? | NC_000913 | = 3065035 | 87 (0.880) | 3 (0.030) | 3/502 | 10.3 | 3.0% | coding (234/1479 nt) | scpC | propionyl‑CoA:succinate CoA transferase |
| ? | NC_000913 | = 3065184 | 108 (1.130) | coding (383/1479 nt) | scpC | propionyl‑CoA:succinate CoA transferase | |||||
| * | ? | NC_000913 | = 617338 | 63 (0.640) | 3 (0.030) | 3/506 | 10.3 | 5.2% | coding (3182/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent |
| ? | NC_000913 | = 618019 | 47 (0.490) | coding (3863/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent | |||||
| * | ? | NC_000913 | 852038 = | 96 (0.970) | 3 (0.030) | 3/510 | 10.4 | 3.1% | coding (560/1584 nt) | opgE | OPG biosynthetic transmembrane phosphoethanolamine transferase |
| ? | NC_000913 | = 852034 | 96 (0.990) | coding (564/1584 nt) | opgE | OPG biosynthetic transmembrane phosphoethanolamine transferase | |||||
| * | ? | NC_000913 | = 4027541 | 109 (1.100) | 3 (0.030) | 3/518 | 10.5 | 2.7% | noncoding (220/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 4027545 = | 107 (1.090) | noncoding (224/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 1562998 = | 108 (1.090) | 3 (0.030) | 3/518 | 10.5 | 3.0% | coding (79/582 nt) | ddpX | D‑ala‑D‑ala dipeptidase, Zn‑dependent |
| ? | NC_000913 | 1563143 = | 89 (0.900) | intergenic (‑67/+191) | ddpX/dosP | D‑ala‑D‑ala dipeptidase, Zn‑dependent/oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator | |||||