mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.6% | 276.2 / 136.5 | 170 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,781,140 | 0 | A | G | 21.4% | 215.6 / 17.4 | 104 | intergenic (+123/‑75) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 3,781,152 | 0 | A | G | 20.2% | 214.2 / 22.9 | 110 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Marginal new junction evidence (lowest skew 10 of 190 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2700550 = | 136 (1.210) | 10 (0.110) | 10/160 | 9.6 | 8.7% | intergenic (‑353/+68) | shoB/acpS | toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | NC_000913 | 2700601 = | 99 (1.090) | intergenic (‑404/+17) | shoB/acpS | toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | = 4542690 | 137 (1.220) | 9 (0.090) | 9/180 | 11.1 | 6.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 125 (1.220) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1113417 = | NA (NA) | 6 (0.070) +24 bp |
5/150 | 11.9 | NA | noncoding (1/98 nt) | RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470516 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| * | ? | NC_000913 | 4542682 = | 148 (1.310) | 6 (0.060) | 6/180 | 12.8 | 4.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 125 (1.220) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 474270 = | NA (NA) | 6 (0.060) | 6/184 | 13.0 | NA | intergenic (+18/+31) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 |
| ? | NC_000913 | 474295 = | NA (NA) | intergenic (+43/+6) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 | |||||
| * | ? | NC_000913 | = 4171607 | 25 (0.220) | 7 (0.070) | 6/186 | 13.1 | 23.0% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3946688 | 119 (1.060) | 7 (0.070) | 6/186 | 13.1 | 5.9% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 7 (0.070) | 6/186 | 13.1 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 1425324 | 117 (1.040) | 7 (0.060) | 7/198 | 13.1 | 5.5% | intergenic (+85/‑53) | trkG/ynaK | Rac prophage; potassium transporter subunit/Rac prophage; conserved protein |
| ? | NC_000913 | = 1425350 | 123 (1.090) | intergenic (+111/‑27) | trkG/ynaK | Rac prophage; potassium transporter subunit/Rac prophage; conserved protein | |||||
| * | ? | NC_000913 | = 774622 | 115 (1.020) | 6 (0.060) | 6/186 | 13.1 | 5.1% | intergenic (+20/‑130) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| ? | NC_000913 | = 774648 | 115 (1.090) | intergenic (+46/‑104) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase | |||||