mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 1366 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4633091 = | NA (NA) | 10 (0.090) | 10/162 | NT | 7.9% | noncoding (1/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4633169 = | 121 (1.070) | noncoding (79/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 4628815 = | 148 (1.230) | 5 (0.050) | 4/164 | NT | 3.4% | noncoding (121/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 4628845 = | 144 (1.300) | intergenic (+298/+10) | nadR/ettA | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | = 4628749 | 104 (0.870) | 6 (0.050) | 4/164 | NT | 5.2% | noncoding (55/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4628768 | 125 (1.130) | noncoding (74/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4627662 = | 132 (1.100) | 8 (0.070) | 5/170 | NT | 5.9% | coding (348/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| ? | NC_000913 | 4627688 = | 127 (1.110) | coding (374/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor | |||||
| * | ? | NC_000913 | = 4627204 | 104 (0.870) | 5 (0.050) | 5/162 | NT | 4.8% | coding (1293/1383 nt) | radA | DNA repair protein |
| ? | NC_000913 | = 4627223 | 105 (0.960) | coding (1312/1383 nt) | radA | DNA repair protein | |||||
| * | ? | NC_000913 | 4618029 = | 133 (1.110) | 5 (0.040) | 5/166 | NT | 4.2% | coding (707/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| ? | NC_000913 | 4618065 = | 104 (0.930) | coding (743/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked | |||||
| * | ? | NC_000913 | 4615433 = | 119 (0.990) | 4 (0.040) | 4/158 | NT | 4.1% | coding (111/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | 4615467 = | 80 (0.750) | coding (77/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | = 4614762 | 135 (1.120) | 6 (0.050) | 5/170 | NT | 4.4% | coding (782/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | = 4614786 | 130 (1.130) | coding (758/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | 4614132 = | 117 (0.970) | 4 (0.040) | 4/160 | NT | 3.7% | coding (652/780 nt) | yjjV | putative DNase |
| ? | NC_000913 | 4614163 = | 104 (0.960) | coding (683/780 nt) | yjjV | putative DNase | |||||
| * | ? | NC_000913 | = 4614130 | 116 (0.970) | 3 (0.030) | 3/174 | NT | 2.6% | coding (650/780 nt) | yjjV | putative DNase |
| ? | NC_000913 | = 4614163 | 109 (0.930) | coding (683/780 nt) | yjjV | putative DNase | |||||