mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 482,807 | A→T | D44V (GAT→GTT) | mreB → | rod shape‑determining protein |
| JC | 490,392 | Δ4 bp | coding (2887‑2890/3801 nt) | yhdP → | DUF3971 domain‑containing protein |
| RA | 635,638 | A→C | F118L (TTT→TTG) | yqjA ← | hypothetical protein |
| RA | 668,994 | T→G | E575A (GAA→GCA) | rpoD ← | RNA polymerase sigma factor RpoD |
| RA | 2,571,230 | C→A | R67S (CGC→AGC) | cls → | cardiolipin synthase A |
| JC JC | 2,991,627 | Δ3 bp :: repeat_region (–) +4 bp :: Δ3 bp | coding (328‑331/1686 nt) | ybjL → | transporter |
| JC | 3,203,934 | (ACCAAAGGTATAACCGGCAAAGTATTGCCG)1→2 | coding (475/708 nt) | ybeR ← | hypothetical protein |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| RA | 3,701,787 | Δ1 bp | coding (2107/2244 nt) | fhuA ← | ferrichrome‑iron receptor |
| JC | 4,493,677 | Δ12 bp | coding (557‑568/1641 nt) | ubiB ← | ubiquinone biosynthesis protein UbiB |
| RA | 4,547,815 | T→C | Y80C (TAC→TGC) | rho ← | transcription termination factor Rho |
| RA | 4,599,491 | C→T | L75F (CTT→TTT) | glmU → | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 2201911 | 14 (0.030) | 397 (0.850) | 202/300 | 0.4 | 95.9% | coding (1337/1533 nt) | pntA | NAD(P) transhydrogenase subunit alpha |
| ? | DH1 | 2204947 = | 20 (0.040) | intergenic (‑382/‑30) | tqsA/mdtJ | AI‑2 transporter TqsA/spermidine export protein MdtJ | |||||
| * | ? | DH1 | = 2668875 | 106 (0.230) | 267 (0.640) | 158/268 | 1.5 | 72.4% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 109 (0.260) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 105 (0.250) | 260 (0.630) | 161/268 | 1.3 | 71.4% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 3970034 = | 22 (0.050) | 521 (1.190) | 230/282 | 0.0 | 96.4% | intergenic (‑120/‑94) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | 3970348 = | 18 (0.040) | intergenic (+32/+48) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970042 | 23 (0.050) | 528 (1.210) | 231/282 | 0.0 | 96.4% | intergenic (‑128/‑86) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | = 3970338 | 18 (0.040) | intergenic (+22/+58) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||