mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 36 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 936,293 | 0 | T | . | 31.7% | 338.7 / 177.0 | 151 | intergenic (‑27/+7) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,169 | 0 | T | . | 31.1% | 179.1 / 84.4 | 76 | intergenic (‑13/+21) | ECDH1_RS04615/ECDH1_RS04620 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 613,770 | 0 | C | A | 30.9% | 220.5 / 34.1 | 212 | intergenic (+631/+392) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 3,448,526 | 0 | A | C | 30.2% | 618.1 / 106.6 | 370 | intergenic (‑86/+70) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 3,906,832 | 0 | C | A | 29.2% | 154.6 / 10.8 | 105 | intergenic (+3/‑32) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 3,906,837 | 0 | C | G | 29.1% | 162.7 / 26.7 | 110 | intergenic (+8/‑27) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 613,613 | 0 | T | G | 28.3% | 193.9 / 39.5 | 201 | intergenic (+474/+549) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 2,169,548 | 0 | G | T | 28.0% | 472.1 / 79.1 | 246 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
| * | DH1 | 3,184,585 | 0 | C | A | 28.0% | 281.3 / 47.3 | 143 | intergenic (+8/‑30) | ECDH1_RS15795/ECDH1_RS15800 | tRNA‑Gln/tRNA‑TERM |
| * | DH1 | 2,169,616 | 0 | G | T | 27.4% | 227.8 / 26.7 | 183 | V648V (GTC→GTA) | rsxC | electron transporter RsxC |
| * | DH1 | 2,169,577 | 0 | T | G | 27.3% | 315.9 / 60.7 | 247 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| * | DH1 | 2,169,720 | 0 | C | G | 26.8% | 157.6 / 48.7 | 161 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| * | DH1 | 936,278 | 1 | . | T | 26.7% | 206.4 / 118.3 | 86 | intergenic (‑12/+22) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 2,591,261 | 0 | C | A | 26.2% | 719.8 / 144.5 | 388 | intergenic (+27/+233) | ECDH1_RS12810/ECDH1_RS12815 | tRNA‑Tyr/hypothetical protein |
| * | DH1 | 936,297 | 0 | A | G | 26.1% | 415.3 / 152.3 | 207 | intergenic (‑31/+3) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 2,591,513 | 0 | T | G | 24.8% | 256.6 / 40.8 | 250 | D86A (GAC→GCC) | ECDH1_RS12815 | hypothetical protein |
| * | DH1 | 613,597 | 0 | G | C | 24.5% | 350.8 / 44.5 | 247 | intergenic (+458/+565) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 3,447,403 | 0 | A | C | 24.2% | 684.1 / 90.7 | 368 | G346G (GGT→GGG) | malZ | alpha‑glycosidase |
| * | DH1 | 2,326,287 | 0 | G | T | 23.9% | 988.2 / 78.9 | 462 | intergenic (+207/+200) | yddM/fdnI | transcriptional regulator/formate dehydrogenase nitrate‑inducible cytochrome b556(Fdn) subunit |
| * | DH1 | 4,122,124 | 0 | C | A | 22.5% | 436.9 / 18.8 | 283 | intergenic (‑15/+22) | ECDH1_RS20430/ECDH1_RS20435 | tRNA‑Gly/tRNA‑Gly |
| Marginal new junction evidence (lowest skew 10 of 53 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 1355966 = | 174 (0.370) | 125 (0.280) +CTTC |
58/292 | 20.9 | 36.4% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099750 | 275 (0.590) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 174 (0.370) | 94 (0.210) +CTTC |
54/292 | 22.2 | 21.8% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3100565 | 521 (1.120) | noncoding (1/76 nt) | ECDH1_RS15385 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 174 (0.370) | 216 (0.480) +CTTC |
54/292 | 22.2 | 56.1% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099542 | NA (NA) | noncoding (268/268 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2590941 | 412 (0.890) | 66 (0.160) | 33/260 | 27.5 | 21.2% | intergenic (+1/‑209) | ECDH1_RS12805/ECDH1_RS12810 | tRNA‑Tyr/tRNA‑Tyr |
| ? | DH1 | 2591414 = | 134 (0.330) | noncoding (199/555 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1519281 | 278 (0.600) | 47 (0.110) +AACCTTCTAATT |
33/276 | 29.0 | 15.5% | coding (788/900 nt) | yfaD | transposase |
| ? | DH1 | 1519282 = | 278 (0.600) | coding (787/900 nt) | yfaD | transposase | |||||
| * | ? | DH1 | 3183985 = | 476 (1.020) | 71 (0.170) +GATTGTTTCTTC |
32/276 | 29.4 | 19.3% | intergenic (+379/‑1) | asnB/ECDH1_RS15770 | asparagine synthetase B/tRNA‑Met |
| ? | DH1 | = 3184256 | 168 (0.360) | intergenic (+2/‑33) | ECDH1_RS15780/ECDH1_RS15785 | tRNA‑Gln/tRNA‑Gln | |||||
| * | ? | DH1 | = 1355505 | 434 (0.930) | 58 (0.140) | 27/260 | 30.4 | 16.0% | noncoding (54/348 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 234 (0.580) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355847 = | 111 (0.240) | 46 (0.100) +CCTC |
25/292 | 34.3 | 19.6% | noncoding (75/76 nt) | ECDH1_RS06680 | tRNA‑Val |
| ? | DH1 | = 3099750 | 276 (0.590) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 2326110 = | NA (NA) | 28 (0.070) +22 bp |
19/256 | 34.6 | NA | intergenic (+30/+377) | yddM/fdnI | transcriptional regulator/formate dehydrogenase nitrate‑inducible cytochrome b556(Fdn) subunit |
| ? | DH1 | = 2326443 | NA (NA) | noncoding (155/176 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 1355843 = | 109 (0.230) | 126 (0.270) +C |
24/298 | 35.3 | 39.8% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099750 | 275 (0.590) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||