mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC | 2,204,804 | Δ120 bp | intergenic (‑239/‑54) | tqsA ← / → mdtJ | AI‑2 transporter TqsA/spermidine export protein MdtJ |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | DH1 | 2201867 | 2204961 | 3095 | 343 [338] | [336] 341 | [pntA]–tqsA | [pntA], pntB, tqsA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 1702500 | 254 (0.520) | 264 (0.560) | 176/292 | 1.9 | 52.9% | noncoding (5/1205 nt) | repeat_region | repeat region |
| ? | DH1 | 1703700 = | 223 (0.470) | noncoding (1205/1205 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2678609 | 229 (0.470) | 272 (0.570) | 168/292 | 2.6 | 53.5% | noncoding (1/1259 nt) | repeat_region | repeat region |
| ? | DH1 | 2679871 = | 250 (0.530) | intergenic (‑69/+280) | insE1/lit | transposase/bacteriophage T4 late gene expression‑blocking protein | |||||
| * | ? | DH1 | 3203897 = | 317 (0.650) | 274 (0.590) | 170/284 | 2.0 | 48.1% | coding (512/708 nt) | ybeR | hypothetical protein |
| ? | DH1 | = 3203926 | 291 (0.630) | coding (483/708 nt) | ybeR | hypothetical protein | |||||
| * | ? | DH1 | 3970034 = | 284 (0.580) | 278 (0.610) | 173/282 | 1.6 | 51.8% | intergenic (‑120/‑94) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | 3970348 = | 250 (0.540) | intergenic (+32/+48) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970042 | 285 (0.580) | 310 (0.680) | 191/282 | 0.5 | 54.5% | intergenic (‑128/‑86) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | = 3970338 | 250 (0.540) | intergenic (+22/+58) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970987 | 236 (0.480) | 236 (0.510) | 166/282 | 2.2 | 49.1% | intergenic (‑37/+16) | fimE/insB1 | tyrosine recombinase/transposase |
| ? | DH1 | 3971764 = | 268 (0.580) | intergenic (‑258/+482) | insB1/fimB | transposase/tyrosine recombinase | |||||