mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 277 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,184,649 | 0 | A | G | 56.4% | 66.1 / inf | 357 | noncoding (35/75 nt) | ECDH1_RS15800 | tRNA‑TERM |
| * | DH1 | 2,572,941 | 0 | C | A | 55.6% | 73.3 / inf | 471 | A325S (GCC→TCC) | oppF | oligopeptide transport ATP‑binding protein OppF |
| * | DH1 | 3,480,868 | 0 | T | C | 55.3% | 204.5 / inf | 563 | I21T (ATA→ACA) | ECDH1_RS17240 | hypothetical protein |
| * | DH1 | 4,547,815 | 0 | T | C | 54.3% | 135.0 / inf | 464 | Y80C (TAC→TGC) | rho | transcription termination factor Rho |
| * | DH1 | 794,503 | 0 | G | A | 53.7% | 118.6 / inf | 446 | A326V (GCG→GTG) | galP | D‑galactose transporter |
| * | DH1 | 3,941,749 | 0 | A | G | 53.6% | 107.9 / inf | 442 | K99E (AAG→GAG) | yjiR | GntR family transcriptional regulator |
| * | DH1 | 3,595,255 | 0 | T | C | 53.5% | 126.0 / inf | 453 | E62G (GAG→GGG) | mmuM | homocysteine S‑methyltransferase |
| * | DH1 | 733,447 | 0 | T | C | 53.2% | 96.5 / inf | 458 | K219E (AAG→GAG) | yghA | NAD(P)‑dependent oxidoreductase |
| * | DH1 | 294,976 | 0 | T | C | 53.1% | 102.9 / inf | 455 | S132P (TCG→CCG) | ugpC | glycerol‑3‑phosphate ABC transporter ATP‑binding protein |
| * | DH1 | 4,141,160 | 0 | A | G | 53.1% | 105.3 / inf | 457 | T272A (ACG→GCG) | yjeJ | hypothetical protein |
| * | DH1 | 2,234,799 | 0 | A | T | 53.0% | 98.0 / inf | 447 | Q209L (CAG→CTG) | ydfU | hypothetical protein |
| * | DH1 | 4,576,560 | 0 | T | C | 53.0% | 110.3 / inf | 500 | T206A (ACG→GCG) | rbsK | ribokinase |
| * | DH1 | 2,542,283 | 0 | C | T | 53.0% | 108.5 / inf | 471 | G522S (GGC→AGC) | acnA | aconitate hydratase 1 |
| * | DH1 | 1,704,610 | 0 | A | G | 52.9% | 75.0 / inf | 392 | Q277Q (CAA→CAG) | ECDH1_RS08300 | galactitol permease IIC component |
| * | DH1 | 1,537,810 | 0 | A | G | 52.9% | 85.1 / inf | 469 | N87D (AAC→GAC) | gyrA | DNA gyrase subunit A |
| * | DH1 | 2,688,095 | 0 | A | G | 52.9% | 76.6 / inf | 438 | K115E (AAA→GAA) | purB | adenylosuccinate lyase |
| * | DH1 | 3,983,008 | 0 | A | G | 52.8% | 85.7 / inf | 461 | Q285Q (CAA→CAG) | sgcX | endoglucanase |
| * | DH1 | 3,527,432 | 0 | T | C | 52.8% | 108.2 / inf | 510 | T214A (ACA→GCA) | yahK | aldehyde reductase YahK |
| * | DH1 | 3,553,167 | 0 | A | G | 52.6% | 88.9 / inf | 491 | T178A (ACG→GCG) | rclC | protein RclC |
| * | DH1 | 2,595,851 | 0 | A | G | 52.5% | 55.7 / inf | 425 | pseudogene (2764/3744 nt) | narZ | nitrate reductase |
| Marginal new junction evidence (lowest skew 10 of 76 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 4549889 | 260 (0.530) | 259 (0.550) | 163/290 | 3.1 | 51.2% | coding (1050/1266 nt) | rhlB | ATP‑dependent RNA helicase RhlB |
| ? | DH1 | 4549896 = | 243 (0.520) | coding (1057/1266 nt) | rhlB | ATP‑dependent RNA helicase RhlB | |||||
| * | ? | DH1 | = 3575873 | 248 (0.510) | 252 (0.530) | 162/292 | 3.3 | 49.1% | noncoding (3/1201 nt) | repeat_region | repeat region |
| ? | DH1 | 3577073 = | 281 (0.590) | intergenic (+151/‑282) | insH1/yagM | transposase/hypothetical protein | |||||
| * | ? | DH1 | = 300335 | NA (NA) | 252 (0.520) | 165/300 | 3.5 | 44.7% | noncoding (772/773 nt) | repeat_region | repeat region |
| ? | DH1 | = 1971083 | 312 (0.640) | coding (41/210 nt) | cspC | cold‑shock protein CspC | |||||
| * | ? | DH1 | 299568 = | NA (NA) | 245 (0.500) | 164/300 | 3.6 | 46.0% | noncoding (5/773 nt) | repeat_region | repeat region |
| ? | DH1 | 1971075 = | 288 (0.590) | coding (33/210 nt) | cspC | cold‑shock protein CspC | |||||
| * | ? | DH1 | = 67831 | 255 (0.520) | 228 (0.500) | 153/280 | 3.6 | 49.1% | coding (619/717 nt) | rph | ribonuclease PH |
| ? | DH1 | 67915 = | 235 (0.520) | coding (703/717 nt) | rph | ribonuclease PH | |||||
| * | ? | DH1 | = 4079176 | 254 (0.520) | 225 (0.490) | 152/284 | 4.0 | 45.5% | noncoding (1/771 nt) | repeat_region | repeat region |
| ? | DH1 | 4079953 = | 299 (0.650) | intergenic (+24/+135) | insB1/ytfH | transposase/HxlR family transcriptional regulator | |||||
| * | ? | DH1 | = 2478888 | 281 (0.580) | 240 (0.510) | 155/290 | 4.0 | 47.4% | noncoding (5/1204 nt) | repeat_region | repeat region |
| ? | DH1 | 2480088 = | 261 (0.550) | intergenic (‑73/‑63) | insH1/fnr | transposase/fumarate and nitrate reduction regulatory protein | |||||
| * | ? | DH1 | = 2991630 | 242 (0.500) | 371 (0.770) | 154/298 | 4.8 | 60.5% | coding (331/1686 nt) | ybjL | transporter |
| ? | DH1 | = 3577068 | NA (NA) | noncoding (1198/1201 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2201911 | 216 (0.440) | 228 (0.470) | 152/300 | 5.2 | 62.0% | coding (1337/1533 nt) | pntA | NAD(P) transhydrogenase subunit alpha |
| ? | DH1 | 2204947 = | 64 (0.130) | intergenic (‑382/‑30) | tqsA/mdtJ | AI‑2 transporter TqsA/spermidine export protein MdtJ | |||||
| * | ? | DH1 | = 300335 | NA (NA) | 248 (0.510) | 152/300 | 5.2 | 48.5% | noncoding (772/773 nt) | repeat_region | repeat region |
| ? | DH1 | 490607 = | 263 (0.540) | coding (3102/3801 nt) | yhdP | DUF3971 domain‑containing protein | |||||