mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 46 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3735261 = | 61 (1.780) | 6 (0.190) | 6/298 | 1.9 | 10.7% | coding (632/849 nt) | yiaJ | transcriptional repressor of yiaK‑S operon |
| ? | CP009273 | 3735587 = | 44 (1.390) | coding (306/849 nt) | yiaJ | transcriptional repressor of yiaK‑S operon | |||||
| * | ? | CP009273 | = 239496 | 35 (1.020) | 7 (0.210) | 6/310 | 1.9 | 14.8% | coding (295/2445 nt) | fadE | acyl coenzyme A dehydrogenase |
| ? | CP009273 | = 239679 | 47 (1.430) | coding (112/2445 nt) | fadE | acyl coenzyme A dehydrogenase | |||||
| * | ? | CP009273 | = 2364700 | 24 (0.700) | 5 (0.150) | 5/308 | 2.1 | 19.3% | coding (314/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
| ? | CP009273 | = 2364868 | 19 (0.580) | coding (482/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase | |||||
| * | ? | CP009273 | = 354947 | 37 (1.080) | 5 (0.160) | 5/294 | 2.1 | 13.1% | coding (438/660 nt) | cynT | carbonic anhydrase |
| ? | CP009273 | = 355075 | 33 (1.060) | coding (566/660 nt) | cynT | carbonic anhydrase | |||||
| * | ? | CP009273 | = 47540 | 32 (0.930) | 5 (0.160) | 4/300 | 2.3 | 15.0% | coding (295/531 nt) | kefF | potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent |
| ? | CP009273 | = 47670 | 27 (0.850) | coding (425/531 nt) | kefF | potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent | |||||
| * | ? | CP009273 | 4438528 = | 54 (1.570) | 4 (0.120) | 4/308 | 2.4 | 8.1% | coding (20/351 nt) | chpB | toxin of the ChpB‑ChpS toxin‑antitoxin system |
| ? | CP009273 | 4438623 = | 40 (1.230) | coding (115/351 nt) | chpB | toxin of the ChpB‑ChpS toxin‑antitoxin system | |||||
| * | ? | CP009273 | 4252643 = | 59 (1.720) | 4 (0.130) | 4/302 | 2.4 | 6.7% | intergenic (+9/‑125) | dusA/pspG | tRNA‑dihydrouridine synthase A/phage shock protein G |
| ? | CP009273 | 4252787 = | 57 (1.780) | coding (20/243 nt) | pspG | phage shock protein G | |||||
| * | ? | CP009273 | 4204319 = | 47 (1.370) | 4 (0.130) | 4/302 | 2.4 | 9.5% | coding (112/930 nt) | metA | homoserine O‑transsuccinylase |
| ? | CP009273 | 4204505 = | 32 (1.000) | coding (298/930 nt) | metA | homoserine O‑transsuccinylase | |||||
| * | ? | CP009273 | 3287192 = | 36 (1.050) | 4 (0.120) | 4/308 | 2.4 | 13.3% | coding (434/2037 nt) | lpoA | OM lipoprotein stimulator of MrcA transpeptidase |
| ? | CP009273 | 3287375 = | 18 (0.550) | coding (617/2037 nt) | lpoA | OM lipoprotein stimulator of MrcA transpeptidase | |||||
| * | ? | CP009273 | = 3202572 | 38 (1.110) | 4 (0.120) | 4/304 | 2.4 | 11.0% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 29 (0.900) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||