mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 51 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,477,752 | 0 | G | A | 64.2% | 432.0 / inf | 336 | L44L (TTG→TTA) | ynbA | putative inner membrane protein |
| * | NC_000913 | 569,184 | 0 | G | A | 63.5% | 628.2 / inf | 512 | G95S (GGT→AGT) | ybcK | DLP12 prophage; putative recombinase |
| * | NC_000913 | 2,237,401 | 0 | A | G | 63.5% | 312.4 / inf | 283 | V118A (GTG→GCG) | mglC | D‑galactose/methyl‑galactoside ABC transporter membrane subunit |
| * | NC_000913 | 1,988,100 | 1 | . | C | 63.4% | 910.6 / inf | 344 | intergenic (‑141/‑122) | azuC/yecR | uncharacterized protein AzuC/lipoprotein YecR |
| * | NC_000913 | 2,517,196 | 0 | G | A | 63.3% | 381.1 / inf | 319 | R213C (CGC→TGC) | pdeA | putative c‑di‑GMP phosphodiesterase PdeA |
| * | NC_000913 | 1,376,980 | 0 | C | T | 63.2% | 242.6 / 301.3 | 242 | A50V (GCG→GTG) | ycjS | putative oxidoreductase YcjS |
| * | NC_000913 | 2,141,325 | 0 | A | G | 62.2% | 330.3 / inf | 349 | S96S (AGT→AGC) | asmA | putative assembly protein AsmA |
| * | NC_000913 | 919,266 | 0 | A | G | 61.8% | 329.5 / inf | 348 | Y11C (TAC→TGC) | macA | ABC‑type tripartite efflux pump membrane fusion protein |
| * | NC_000913 | 1,207,769 | 0 | T | C | 61.4% | 295.8 / inf | 324 | V90A (GTG→GCG) | ycfK | e14 prophage; protein StfP |
| * | NC_000913 | 3,995,345 | 0 | A | G | 61.2% | 365.2 / inf | 392 | Q195R (CAA→CGA) | dapF | diaminopimelate epimerase |
| * | NC_000913 | 4,009,714 | 0 | A | G | 60.8% | 196.5 / inf | 232 | N182S (AAC→AGC) | pldB | lysophospholipase L2 |
| * | NC_000913 | 1,232,313 | 0 | A | G | 60.7% | 236.1 / inf | 303 | V376V (GTA→GTG) | umuC | DNA polymerase V catalytic protein |
| * | NC_000913 | 3,122,522 | 0 | T | C | 60.6% | 351.6 / inf | 391 | E428E (GAA→GAG) | glcB | malate synthase G |
| * | NC_000913 | 228,597 | 0 | G | A | 60.0% | ‑6.0 / 23.7 | 20 | noncoding (2839/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 2,519,522 | 0 | G | A | 59.8% | 261.7 / inf | 343 | A384V (GCG→GTG) | gltX | glutamate‑‑tRNA ligase |
| * | NC_000913 | 3,761,148 | 0 | G | A | 59.2% | 344.9 / inf | 412 | T34T (ACC→ACT) | selA | selenocysteine synthase |
| * | NC_000913 | 2,413,554 | 0 | T | C | 58.9% | 260.7 / inf | 349 | Y29H (TAC→CAC) | ackA | acetate kinase |
| * | NC_000913 | 410,892 | 1 | . | G | 57.8% | inf / inf | 306 | coding (749/909 nt) | mak | manno(fructo)kinase |
| * | NC_000913 | 1,286,577 | 0 | A | G | 57.7% | 135.2 / inf | 260 | intergenic (+51/‑132) | narI/ychS | nitrate reductase A subunit gamma/putative uncharacterized protein YchS |
| * | NC_000913 | 1,941,260 | 0 | C | T | 56.6% | 183.2 / inf | 320 | A126T (GCC→ACC) | mepM | peptidoglycan DD‑endopeptidase MepM |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 71350 | 402 (1.060) | 136 (0.370) | 59/188 | 10.9 | 41.1% | intergenic (+85/‑1) | araC/yabI | DNA‑binding transcriptional dual regulator AraC/DedA family protein YabI |
| ? | NC_000913 | = 2857042 | 0 (0.000) | intergenic (‑236/‑51) | ygbA/mutS | protein YgbA/DNA mismatch repair protein MutS | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 23 (0.060) | 22/194 | 21.3 | 4.0% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3623359 = | 557 (1.470) | coding (4168/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 24 (0.060) | 19/194 | 22.5 | 4.2% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3623367 | 552 (1.460) | coding (4176/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NC_000913 | 3623359 = | 557 (1.470) | 13 (0.040) +GGTG |
12/186 | 25.2 | 2.4% | coding (4168/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NC_000913 | 4518476 = | NA (NA) | noncoding (5/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 1049778 = | NA (NA) | 14 (0.040) | 13/194 | 25.2 | 2.5% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3623359 = | 557 (1.470) | coding (4168/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NC_000913 | 279163 = | NA (NA) | 17 (0.040) | 12/194 | 25.7 | 3.0% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3623367 | 552 (1.460) | coding (4176/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NC_000913 | = 3623367 | 552 (1.460) | 4 (0.010) | 4/194 | 30.9 | 0.72% | coding (4176/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NC_000913 | = 4519239 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||