mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,189,614 | 0 | T | G | 63.6% | 8.5 / 20.2 | 22 | intergenic (+41/‑172) | rpoC/yjaZ | RNA polymerase subunit beta'/conserved protein YjaZ |
| * | NC_000913 | 2,282,331 | 0 | T | G | 55.6% | ‑6.5 / 10.7 | 9 | V567G (GTG→GGG) | radD | putative DNA repair helicase RadD |
| * | NC_000913 | 2,087,406 | 0 | A | C | 50.0% | 0.0 / 11.5 | 12 | W285G (TGG→GGG) | yeeY | putative DNA‑binding transcriptional regulator YeeY |
| * | NC_000913 | 4,414,906 | 0 | T | G | 47.1% | 4.2 / 17.2 | 17 | V211G (GTG→GGG) | aidB | putative acyl‑CoA dehydrogenase AidB |
| * | NC_000913 | 4,296,060 | 0 | C | T | 44.0% | 20.4 / 95.4 | 75 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,648,148 | 0 | A | C | 39.1% | 27.3 / 18.9 | 23 | G1380G (GGT→GGG) | yfhM | alpha2‑macroglobulin |
| * | NC_000913 | 1,374,034 | 0 | G | . | 35.7% | 23.1 / 17.3 | 14 | coding (813/882 nt) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,702,245 | 0 | A | C | 35.0% | 29.6 / 12.4 | 20 | T5P (ACC→CCC) | add | adenosine deaminase |
| * | NC_000913 | 2,349,621 | 0 | A | C | 35.0% | 20.5 / 18.0 | 20 | intergenic (‑149/‑66) | inaA/yfaH | putative lipopolysaccharide kinase InaA/putative uncharacterized protein YfaH |
| * | NC_000913 | 3,697,740 | 0 | T | G | 33.3% | 39.4 / 16.3 | 24 | V428G (GTG→GGG) | bcsE | c‑di‑GMP‑binding protein BcsE |
| * | NC_000913 | 3,773,700 | 0 | A | T | 32.3% | 53.8 / 18.2 | 31 | N474Y (AAC→TAC) | mtlA | mannitol‑specific PTS enzyme IICBA component |
| * | NC_000913 | 4,154,935 | 0 | A | C | 31.7% | 77.5 / 29.6 | 41 | intergenic (‑88/‑66) | argE/argC | acetylornithine deacetylase/N‑acetylglutamylphosphate reductase |
| * | NC_000913 | 821,440 | 0 | C | T | 28.9% | 67.6 / 18.8 | 45 | F216F (TTC→TTT) | ybhM | Bax1‑I family protein YbhM |
| * | NC_000913 | 1,374,036 | 0 | T | G | 27.8% | 28.1 / 13.1 | 18 | L272R (CTC→CGC) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 987,014 | 0 | A | C | 27.3% | 41.6 / 12.1 | 22 | intergenic (‑32/+571) | ompF/asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| * | NC_000913 | 3,812,386 | 0 | C | A | 27.3% | 43.5 / 11.0 | 22 | L58F (TTG→TTT) | yicR | RadC‑like JAB domain‑containing protein YicR |
| * | NC_000913 | 1,374,039 | 0 | T | G | 25.0% | 38.8 / 12.8 | 20 | F273C (TTC→TGC) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,711,796 | 0 | A | C | 23.5% | 86.1 / 10.3 | 34 | T92P (ACC→CCC) | nth | endonuclease III |
| * | NC_000913 | 11,369 | 0 | C | T | 20.5% | 72.3 / 12.3 | 39 | intergenic (‑13/+13) | yaaW/yaaI | putative enzyme‑specific chaperone YaaW/DUF2541 domain‑containing protein YaaI |
| * | NC_000913 | 305,236 | 0 | A | C | 20.0% | 57.7 / 10.2 | 25 | F528V (TTT→GTT) | ecpD | fimbrial adhesin EcpD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 51 (1.220) | 8 (0.220) | 8/110 | 1.1 | 13.9% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 55 (1.540) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||