mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 401,284 | G→T | 35.4% | intergenic (‑361/‑102) | ddlA ← / → iraP | D‑alanine‑‑D‑alanine ligase A/anti‑adaptor protein for sigma(S) stabilization |
| JC JC | 1,291,508 | IS5 (+) +4 bp | 9.0% | coding (52‑55/909 nt) | galU → | UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| JC JC | 1,292,151 | IS4 (+) +12 bp | 35.4% | coding (695‑706/909 nt) | galU → | UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| MC JC | 1,397,381 | Δ13,756 bp | 100% | [ynaJ]–[ttcA] | 16 genes [ynaJ], uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, [ttcA] |
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| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,164,140 | G→C | 100% | G422A (GGT→GCT) | baeS → | sensory histidine kinase BaeS |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,667,560 | A→T | 100% | L96Q (CTG→CAG) | hcaT ← | putative 3‑phenylpropionate transporter |
| RA | 3,535,129 | G→A | 100% | T247M (ACG→ATG) | envZ ← | sensory histidine kinase EnvZ |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,185,025 | G→T | 6.6% | G1261C (GGT→TGT) | rpoB → | RNA polymerase subunit beta |
| RA | 4,296,060 | C→T | 30.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,382,719 | T→A | 33.6% | I26N (ATC→AAC) | epmA → | EF‑P‑lysine lysyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423714–3424234 | 3424594–3424238 | 5–881 | 75 [73] | [71] 75 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 44 (0.330) | 52 (0.470) | 41/144 | NT | 56.9% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 43 (0.390) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 44 (0.330) | 46 (0.420) | 36/144 | NT | 53.8% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 43 (0.390) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 123 (0.950) | 88/168 | NT | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3476003 | 118 (0.870) | 10 (0.080) | 10/164 | NT | 8.2% | coding (438/723 nt) | yheO | putative DNA‑binding transcriptional regulator YheO |
| ? | NC_000913 | 3478963 = | 114 (0.910) | coding (1645/1806 nt) | kefB | K(+) : H(+) antiporter KefB | |||||