mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,111,747 | 0 | G | T | 44.1% | 40.4 / 31.7 | 34 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,604,344 | 0 | C | T | 44.0% | 38.1 / 36.1 | 50 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 1,825,061 | 0 | G | A | 42.9% | 12.9 / 12.8 | 21 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 888,014 | 0 | T | G | 36.1% | 52.6 / 12.4 | 36 | noncoding (44/81 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 4,429,984 | 0 | T | G | 35.7% | 38.7 / 13.1 | 28 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 4,628,649 | 0 | A | C | 30.6% | 63.4 / 13.2 | 36 | intergenic (+102/+206) | nadR/ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| * | NC_000913 | 646,747 | 0 | T | G | 29.0% | 52.0 / 15.4 | 31 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 27.8% | 61.3 / 20.8 | 36 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 646,760 | 0 | T | C | 26.7% | 48.1 / 10.7 | 30 | K250K (AAA→AAG) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 25.7% | 72.2 / 10.7 | 35 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.5% | 93.3 / 26.9 | 49 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,206,435 | 0 | C | T | 24.2% | 60.2 / 11.4 | 33 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 1,068,173 | 0 | T | G | 22.6% | 126.1 / 10.1 | 54 | G31G (GGT→GGG) | ymdF | conserved protein YmdF |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3588424 = | 58 (1.070) | 5 (0.100) | 5/250 | 4.7 | 8.6% | coding (757/1071 nt) | ugpC | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
| ? | NC_000913 | 3589222 = | 53 (1.070) | coding (806/846 nt) | ugpE | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE | |||||
| * | ? | NC_000913 | 1462089 = | 44 (0.810) | 10 (0.200) | 5/250 | 4.7 | 17.1% | coding (1197/1206 nt) | paaJ | beta‑ketoadipyl‑CoA thiolase |
| ? | NC_000913 | 1462223 = | 57 (1.150) | coding (99/1314 nt) | paaK | phenylacetate‑CoA ligase | |||||
| * | ? | NC_000913 | = 235344 | 54 (0.990) | 4 (0.080) | 4/258 | 5.2 | 7.8% | coding (529/723 nt) | yafS | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| ? | NC_000913 | = 235428 | 44 (0.860) | coding (613/723 nt) | yafS | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase | |||||
| * | ? | NC_000913 | 2711571 = | 62 (1.140) | 4 (0.080) | 4/266 | 5.3 | 6.8% | coding (1152/1623 nt) | nadB | L‑aspartate oxidase |
| ? | NC_000913 | 2711677 = | 50 (0.950) | coding (1258/1623 nt) | nadB | L‑aspartate oxidase | |||||
| * | ? | NC_000913 | = 3130011 | 66 (1.220) | 4 (0.080) | 4/268 | 5.4 | 5.8% | coding (205/1173 nt) | yghO | putative DNA‑binding transcriptional regulator YghO |
| ? | NC_000913 | 3130015 = | 66 (1.240) | coding (201/1173 nt) | yghO | putative DNA‑binding transcriptional regulator YghO | |||||
| * | ? | NC_000913 | 1879829 = | 6 (0.110) | 4 (0.070) | 4/270 | 5.4 | 40.0% | coding (120/360 nt) | yeaR | DUF1971 domain‑containing protein YeaR |
| ? | NC_000913 | = 2515616 | NA (NA) | noncoding (1344/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 1687107 | 63 (1.160) | 3 (0.060) | 3/242 | 5.5 | 7.1% | coding (1271/1647 nt) | fumA | fumarase A |
| ? | NC_000913 | = 1691364 | 23 (0.480) | intergenic (+4/+222) | ydgA/uidC | conserved protein YdgA/outer membrane porin family protein | |||||
| * | ? | NC_000913 | 844343 = | 42 (0.770) | 3 (0.060) | 3/248 | 5.6 | 6.3% | coding (1138/2226 nt) | ybiO | moderate conductance mechanosensitive channel |
| ? | NC_000913 | 845276 = | 51 (1.040) | coding (205/2226 nt) | ybiO | moderate conductance mechanosensitive channel | |||||
| * | ? | NC_000913 | 3554069 = | 33 (0.610) | 5 (0.100) | 3/256 | 5.7 | 15.0% | coding (985/2706 nt) | malT | DNA‑binding transcriptional activator MalT |
| ? | NC_000913 | 3554183 = | 26 (0.510) | coding (1099/2706 nt) | malT | DNA‑binding transcriptional activator MalT | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 6 (0.120) | 3/256 | 5.7 | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||