mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 25,738 | C→A | intergenic (+37/‑88) | lspA → / → fkpB | lipoprotein signal peptidase/peptidyl‑prolyl cis‑trans isomerase FkpB |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 832,483 | C→T | L156L (TTG→TTA) | ybiA ← | N‑glycosidase YbiA |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,411,009 | C→T | intergenic (+125/+4) | dbpA → / ← ttcA | ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,059,939 | G→T | intergenic (+13/+25) | asnU → / ← cbl | tRNA‑Asn/DNA‑binding transcriptional activator Cbl |
| RA | 2,083,942 | T→C | I396T (ATC→ACC) | sbcB → | exodeoxyribonuclease I |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,209,285 | C→A | G62G (GGC→GGA) | yehQ → | SWIM zinc finger domains‑containing protein YehQ |
| RA | 2,495,868 | G→A | R75H (CGC→CAC) | lpxP → | palmitoleoyl acyltransferase |
| RA | 2,919,265 | C→A | V41L (GTG→TTG) | gudD ← | D‑glucarate dehydratase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,358,858 | G→T | L1378L (CTG→CTT) | gltB → | glutamate synthase subunit GltB |
| RA | 3,384,163 | C→A | A36S (GCT→TCT) | mdh ← | malate dehydrogenase |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,085,346 | G→T | L159L (CTC→CTA) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,438,365 | C→A | A220E (GCG→GAG) | ytfI → | protein YtfI |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102970 | 3104085 | 1116 | 36 [33] | [33] 35 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423768–3424230 | 3424528–3424238 | 9–761 | 38 [32] | [33] 36 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 48 (0.400) | 117 (1.090) | 73/244 | 0.1 | 75.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 34 (0.320) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 48 (0.400) | 69 (0.640) | 45/244 | 0.8 | 64.4% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 34 (0.320) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 158 (1.340) | 80/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 189 (1.560) | 159 (1.320) | 79/274 | 0.1 | 62.2% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 6 (0.050) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 152 (1.250) | 85/276 | 0.1 | 96.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 5 (0.040) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||