mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 97 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 224,943 | 0 | T | C | 70.5% | 141.6 / 219.7 | 275 | noncoding (1173/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,968 | 0 | G | A | 68.2% | 114.2 / 168.3 | 173 | noncoding (1198/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,938 | 0 | T | C | 68.0% | 175.0 / 252.4 | 284 | noncoding (1168/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,933 | 0 | A | G | 67.1% | 192.0 / 266.6 | 289 | noncoding (1163/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,984 | 0 | C | T | 66.7% | 88.0 / 123.1 | 120 | noncoding (1214/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,977 | 0 | G | C | 66.2% | 107.8 / 163.5 | 133 | noncoding (1207/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,920 | 0 | A | T | 65.0% | 254.3 / inf | 297 | noncoding (1150/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,989 | 0 | A | T | 64.5% | 77.2 / 112.1 | 93 | noncoding (1219/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,923 | 0 | G | A | 64.3% | 246.2 / inf | 297 | noncoding (1153/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,910 | 0 | C | G | 63.9% | 279.4 / inf | 303 | noncoding (1140/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,911 | 0 | C | T | 63.7% | 261.2 / inf | 303 | noncoding (1141/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,915 | 0 | A | C | 63.7% | 268.9 / inf | 303 | noncoding (1145/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,906 | 0 | C | T | 62.2% | 262.2 / inf | 303 | noncoding (1136/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,893 | 0 | T | A | 59.6% | 360.3 / inf | 322 | noncoding (1123/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,903 | 0 | G | A | 58.9% | 318.5 / inf | 316 | noncoding (1133/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,885 | 0 | T | C | 58.5% | 336.6 / inf | 328 | noncoding (1115/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,889 | 0 | C | T | 58.0% | 362.7 / inf | 328 | noncoding (1119/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,904 | 0 | G | C | 57.3% | 351.6 / inf | 316 | noncoding (1134/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 225,003 | 0 | G | A | 51.4% | 43.6 / 51.7 | 35 | noncoding (1233/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,851 | 0 | A | G | 47.3% | 366.7 / inf | 245 | noncoding (1081/1542 nt) | rrsH | 16S ribosomal RNA |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225500 = | 30 (0.310) | 46 (0.600) +30 bp |
13/216 | 3.1 | 74.1% | noncoding (1/76 nt) | alaV | tRNA‑Ala |
| ? | NC_000913 | = 4037217 | 11 (0.110) | noncoding (77/77 nt) | ileT | tRNA‑Ile | |||||
| * | ? | NC_000913 | = 4037217 | 11 (0.110) | 46 (0.600) +30 bp |
12/216 | 3.3 | 91.4% | noncoding (77/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037260 = | 0 (0.000) | noncoding (1/76 nt) | alaT | tRNA‑Ala | |||||
| * | ? | NC_000913 | = 225457 | NA (NA) | 46 (0.600) +30 bp |
12/216 | 3.3 | 66.2% | noncoding (77/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | 225500 = | 30 (0.310) | noncoding (1/76 nt) | alaV | tRNA‑Ala | |||||
| * | ? | NC_000913 | = 4037217 | 11 (0.110) | 20 (0.250) +26 bp |
7/224 | 4.8 | 69.1% | noncoding (77/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037256 = | NA (NA) | intergenic (+39/‑4) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 225496 = | 28 (0.290) | 20 (0.250) +26 bp |
7/224 | 4.8 | 55.8% | intergenic (+39/‑4) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | = 4037217 | 11 (0.110) | noncoding (77/77 nt) | ileT | tRNA‑Ile | |||||
| * | ? | NC_000913 | = 225457 | NA (NA) | 20 (0.250) +26 bp |
7/224 | 4.8 | 46.8% | noncoding (77/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | 225496 = | 28 (0.290) | intergenic (+39/‑4) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 2521248 | 50 (0.510) | 19 (0.220) +TAAACACTTTTTAAC |
7/246 | 5.1 | 32.1% | noncoding (76/76 nt) | valY | tRNA‑Val |
| ? | NC_000913 | 2947605 = | 40 (0.410) | intergenic (+32/‑2) | metW/metV | tRNA‑Met/tRNA‑Met | |||||
| * | ? | NC_000913 | = 2521248 | 50 (0.510) | 19 (0.220) +TAAACACTTTTTAAC |
7/246 | 5.1 | 31.9% | noncoding (76/76 nt) | valY | tRNA‑Val |
| ? | NC_000913 | 2947495 = | 41 (0.420) | intergenic (+32/‑2) | metZ/metW | tRNA‑Met/tRNA‑Met | |||||
| * | ? | NC_000913 | = 2521248 | 50 (0.510) | 19 (0.220) +TAAACACTTTTTAAC |
7/246 | 5.1 | 27.1% | noncoding (76/76 nt) | valY | tRNA‑Val |
| ? | NC_000913 | 2947385 = | 65 (0.670) | intergenic (‑207/‑2) | mltA/metZ | membrane‑bound lytic murein transglycosylase A/tRNA‑Met | |||||
| * | ? | NC_000913 | = 2521126 | 62 (0.640) | 19 (0.220) +TAAACACTTTTTAAC |
7/246 | 5.1 | 29.5% | noncoding (76/76 nt) | valX | tRNA‑Val |
| ? | NC_000913 | 2947605 = | 40 (0.410) | intergenic (+32/‑2) | metW/metV | tRNA‑Met/tRNA‑Met | |||||