mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 188,837 | C→T | R316C (CGC→TGC) | PP_0165 → | GGDEF domain‑containing protein |
| RA | 233,545 | C→T | G548G (GGC→GGT) | PP_0180 → | cytochrome c family protein |
| RA | 476,133 | A→T | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| RA | 1,011,323 | +T | intergenic (‑258/+192) | PP_0871 ← / ← SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| RA | 1,015,820 | A→C | intergenic (‑47/‑721) | SBRG_Ecoli_galE ← / → prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| RA | 1,165,507 | T→C | F122L (TTC→CTC) | gtsC → | mannose/glucose ABC transporter permease |
| RA | 1,168,596 | G→T | intergenic (+65/‑53) | oprB‑I → / → yeaD | carbohydrate‑selective porin/glucose‑6‑phosphate 1‑epimerase |
| MC JC | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| RA | 1,856,513 | A→G | D203G (GAT→GGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 2,209,475 | A→T | N387I (AAC→ATC) | PP_1948 → | benzaldehyde dehydrogenase |
| RA | 2,384,391 | C→A | Q227K (CAA→AAA) | cmpX → | protein CmpX |
| RA | 4,018,201 | G→A | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,746,222 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,224 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,226 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,229 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,232 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,234 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,248 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,250 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,253 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,829,283 | C→G | E2301Q (GAA→CAA) | pvdL ← | non‑ribosomal peptide synthetase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 746964 | NA (NA) | 402 (1.050) | 155/288 | 0.4 | 90.5% | intergenic (‑88/‑706) | PP_0638/PP_5448 | transposase/hypothetical protein |
| ? | NC_002947 | = 1015874 | 42 (0.110) | intergenic (‑101/‑667) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 | |||||
| * | ? | NC_002947 | 1015867 = | 15 (0.040) | 437 (1.150) | 174/286 | 0.1 | 69.3% | intergenic (‑94/‑674) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | 5406744 = | 373 (0.980) | intergenic (+1123/+45) | PP_4743/PP_4745 | hypothetical protein/transposase | |||||
| * | ? | NC_002947 | 1084585 = | 22 (0.060) | 529 (1.420) | 187/280 | 0.0 | 73.2% | coding (826/1458 nt) | rng | endoribonuclease G |
| ? | NC_002947 | = 2184365 | 367 (0.990) | intergenic (+172/+96) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1084591 | 5 (0.010) | 427 (1.120) | 166/286 | 0.2 | 70.9% | coding (832/1458 nt) | rng | endoribonuclease G |
| ? | NC_002947 | 2182694 = | 346 (0.910) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||
| * | ? | NC_002947 | 1849125 = | 2 (0.010) | 438 (1.180) | 169/278 | 0.1 | 69.9% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2184368 | 376 (1.020) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1849128 | 2 (0.010) | 339 (0.910) | 157/280 | 0.3 | 66.1% | coding (657/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 2182694 = | 346 (0.930) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||