mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 697,097 | A→G | intergenic (+21/‑730) | mmsA‑I → / → PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| RA | 697,103 | T→G | intergenic (+27/‑724) | mmsA‑I → / → PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| RA | 3,824,695 | G→C | L152V (CTG→GTG) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,825,009 | G→T | T47N (ACC→AAC) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,827,929 | C→A | V28F (GTC→TTC) | ptxS ← | 2‑ketogluconate utilization repressor |
| JC | 4,717,316 | (CTGAGCCTGGCC)1→2 | coding (579/1932 nt) | PP_4173 → | two‑component system sensor histidine kinase/response regulator |
| RA | 4,743,195 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,197 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,199 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,202 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,205 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,207 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,221 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,223 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,226 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 97546 | 97627 | 82 | 39 [34] | [37] 43 | [PP_0090]–[PP_0091] | [PP_0090],[PP_0091] |
| * | * | ÷ | NC_002947 | 171313–172965 | 181768–178401 | 5437–10456 | 38 [37] | [36] 38 | PP_16SA–[PP_r01] | PP_16SA,PP_23SA,PP_5SA,PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 524128 | 524277 | 150 | 38 [37] | [37] 38 | [tyrS] | [tyrS] |
| * | * | ÷ | NC_002947 | 681223 | 681333 | 111 | 38 [37] | [26] 41 | [PP_0583]–[PP_0584] | [PP_0583],[PP_0584] |
| * | * | ÷ | NC_002947 | 4355125 | 4355184 | 60 | 46 [33] | [37] 39 | yrpB | 2‑nitropropane dioxygenase |
| * | * | ÷ | NC_002947 | 4742771 | 4742889 | 119 | 39 [36] | [36] 38 | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | * | ÷ | NC_002947 | 5508425 | 5508615 | 191 | 38 [37] | [35] 39 | [PP_4839] | [PP_4839] |
| * | * | ÷ | NC_002947 | 6183852 | 6183858 | 7 | 105 [0] | [0] NA | atpI/– | ATP synthase protein I/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1 = | 0 (0.000) | 104 (0.850) | 39/264 | 1.1 | 100% | intergenic (–/+146) | –/parB | –/chromosome‑partitioning protein |
| ? | NC_002947 | = 6183851 | 0 (0.000) | intergenic (‑3/–) | atpI/– | ATP synthase protein I/– | |||||
| * | ? | NC_002947 | 4810141 = | 28 (0.230) | 31 (0.340) | 18/194 | 2.3 | 34.0% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5990913 | 100 (1.110) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||