mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 25.3% | 128.4 / 51.0 | 87 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 76 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 46 (1.080) | 6 (0.160) | 6/254 | 4.5 | 13.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 36 (0.950) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3944978 | NA (NA) | 8 (0.200) | 6/274 | 4.8 | 18.8% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038811 | 36 (0.850) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2727891 = | NA (NA) | 9 (0.220) | 6/274 | 4.8 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 227052 | 19 (0.450) | 9 (0.220) | 6/274 | 4.8 | 33.1% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2766337 | 42 (0.990) | 5 (0.120) | 5/272 | 5.3 | 11.0% | coding (420/1074 nt) | rnlA | CP4‑57 prophage; RNase LS |
| ? | NC_000913_3_hsa_tpiA | = 2766341 | 41 (1.010) | coding (424/1074 nt) | rnlA | CP4‑57 prophage; RNase LS | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2347274 | 74 (1.740) | 5 (0.120) | 5/276 | 5.3 | 6.3% | noncoding (115/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 2347284 | 78 (1.900) | noncoding (125/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2347200 | 63 (1.480) | 5 (0.120) | 5/280 | 5.4 | 7.1% | noncoding (41/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 2347271 | 70 (1.680) | noncoding (112/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2025238 | 51 (1.200) | 4 (0.100) | 4/266 | 5.7 | 7.7% | noncoding (76/87 nt) | dsrA | sRNA antisense regulator enhances translation of RpoS, Hfq‑dependent |
| ? | NC_000913_3_hsa_tpiA | = 2025243 | 49 (1.240) | noncoding (71/87 nt) | dsrA | sRNA antisense regulator enhances translation of RpoS, Hfq‑dependent | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3943834 = | 0 (0.000) | 4 (0.100) | 4/272 | 5.8 | 100% | noncoding (131/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | 4037667 = | NA (NA) | noncoding (149/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3867586 = | 35 (0.820) | 4 (0.100) | 4/274 | 5.8 | 9.9% | intergenic (‑164/‑142) | ibpA/yidQ | heat shock chaperone/DUF1375 family outer membrane protein |
| ? | NC_000913_3_hsa_tpiA | 3867601 = | 39 (0.960) | intergenic (‑179/‑127) | ibpA/yidQ | heat shock chaperone/DUF1375 family outer membrane protein | |||||