mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 216 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3876102 = | 41 (1.220) | 5 (0.160) | 5/262 | 3.5 | 12.5% | intergenic (+8/+38) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase |
| ? | NC_000913_3_pae_tpiA | 3876133 = | 32 (1.030) | intergenic (+39/+7) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 420940 | 35 (1.040) | 5 (0.160) | 5/260 | 3.5 | 12.9% | intergenic (+30/‑46) | brnQ/proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| ? | NC_000913_3_pae_tpiA | = 420946 | 35 (1.130) | intergenic (+36/‑40) | brnQ/proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3921430 | 39 (1.160) | 5 (0.160) | 5/270 | 3.6 | 12.0% | coding (622/816 nt) | atpB | F0 sector of membrane‑bound ATP synthase, subunit a |
| ? | NC_000913_3_pae_tpiA | = 3921440 | 36 (1.120) | coding (612/816 nt) | atpB | F0 sector of membrane‑bound ATP synthase, subunit a | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3682074 | 46 (1.370) | 5 (0.160) | 5/266 | 3.6 | 10.0% | intergenic (‑134/+87) | yhjJ/dctA | putative periplasmic M16 family chaperone/C4‑dicarboxylic acid, orotate and citrate transporter |
| ? | NC_000913_3_pae_tpiA | = 3682087 | 47 (1.480) | intergenic (‑147/+74) | yhjJ/dctA | putative periplasmic M16 family chaperone/C4‑dicarboxylic acid, orotate and citrate transporter | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1242835 | 36 (1.070) | 6 (0.190) | 5/268 | 3.6 | 15.0% | coding (246/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | NC_000913_3_pae_tpiA | = 1242840 | 34 (1.070) | coding (241/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | NC_000913_3_pae_tpiA | 281896 = | 39 (1.160) | 5 (0.160) | 5/266 | 3.6 | 11.7% | coding (88/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_pae_tpiA | 281923 = | 39 (1.230) | coding (61/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_pae_tpiA | 2700550 = | 25 (0.740) | 4 (0.140) | 4/244 | 3.7 | 14.9% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_pae_tpiA | 2700601 = | 24 (0.830) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913_3_pae_tpiA | = 253532 | 32 (0.950) | 3 (0.120) +35 bp |
3/212 | 3.7 | 9.1% | pseudogene (54/207 nt) | ykfJ | pseudogene |
| ? | NC_000913_3_pae_tpiA | 3071270 = | 48 (1.430) | intergenic (‑26/+189) | fbaA/pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 253532 | 32 (0.950) | 3 (0.120) +36 bp |
3/210 | 3.7 | 12.0% | pseudogene (54/207 nt) | ykfJ | pseudogene |
| ? | NC_000913_3_pae_tpiA | 596980 = | 27 (0.800) | intergenic (+7/‑151) | cusC/cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 24 (0.720) | 4 (0.130) | 4/250 | 3.8 | 13.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 29 (0.970) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||