mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,037,225 | 0 | A | . | 25.0% | 20.9 / 10.4 | 18 | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913_3_pae_tpiA | 4,037,227 | 1 | . | T | 25.0% | 7.7 / 14.1 | 16 | intergenic (+10/‑33) | ileT/alaT | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 25.0% | 119.9 / 50.7 | 92 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 154 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 48 (0.810) | 11 (0.200) | 11/272 | 5.0 | 17.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 57 (1.020) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 225281 | NA (NA) | 9 (0.160) | 7/280 | 6.9 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040683 | 86 (1.440) | 12 (0.200) | 7/286 | 7.0 | 15.9% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4213078 | 42 (0.710) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 1552011 = | 70 (1.170) | 5 (0.090) | 5/266 | 7.6 | 7.2% | intergenic (+20/+387) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_pae_tpiA | 1552043 = | NA (NA) | intergenic (+52/+355) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_pae_tpiA | 4121531 = | 117 (1.960) | 5 (0.090) | 5/276 | 7.8 | 4.3% | coding (133/1332 nt) | hslU | molecular chaperone and ATPase component of HslUV protease |
| ? | NC_000913_3_pae_tpiA | 4121551 = | 113 (1.990) | coding (113/1332 nt) | hslU | molecular chaperone and ATPase component of HslUV protease | |||||
| * | ? | NC_000913_3_pae_tpiA | 3525427 = | 50 (0.840) | 7 (0.130) | 5/272 | 7.8 | 13.0% | intergenic (+4/+162) | mrcA/nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| ? | NC_000913_3_pae_tpiA | 3525449 = | NA (NA) | intergenic (+26/+140) | mrcA/nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase | |||||
| * | ? | NC_000913_3_pae_tpiA | 1552011 = | 70 (1.170) | 5 (0.090) | 5/274 | 7.8 | 7.0% | intergenic (+20/+387) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_pae_tpiA | 1552221 = | NA (NA) | intergenic (+230/+177) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3946824 | 21 (0.350) | 5 (0.090) | 5/286 | 8.1 | 8.6% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913_3_pae_tpiA | = 4040681 | 86 (1.460) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423665 = | NA (NA) | 5 (0.090) | 5/286 | 8.1 | 5.6% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 4040683 | 86 (1.440) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3335199 | 56 (0.940) | 5 (0.090) | 5/286 | 8.1 | 8.8% | intergenic (+12/+36) | sfsB/murA | malPQ operon transcriptional activator/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| ? | NC_000913_3_pae_tpiA | = 3335219 | 49 (0.830) | intergenic (+32/+16) | sfsB/murA | malPQ operon transcriptional activator/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase | |||||